Gene
| Gene Model ID | pfu_aug2.0_310.1_00583 |
|---|---|
| Locus | scaffold310.1 : 156880 ... 166612 : + |
| To GenomeBrowser | scaffold310.1:156880..166612 |
| Genes list of scaffold | scaffold310.1 |
| Synonym | pfu_aug1.0_2535.1_23009 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_310.1_00583.t1 | 3 | 1 | PDCD2_C | 58 | 75 | 1.9e-38 | 131.6 | 0.28 | 1400.0 | -1.3 |
| pfu_aug2.0_310.1_00583.t1 | 3 | 2 | PDCD2_C | 127 | 155 | 1.9e-38 | 131.6 | 0.78 | 3800.0 | -2.7 |
| pfu_aug2.0_310.1_00583.t1 | 3 | 3 | PDCD2_C | 252 | 404 | 1.9e-38 | 131.6 | 3.80032e-42 | 1.9e-38 | 131.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_310.1_00583.t1 | gi|597731622|ref|XP_007228176.1| | PREDICTED: programmed cell death protein 2-like [Astyanax mexicanus] | 0.0 |
| pfu_aug2.0_310.1_00583.t1 | gi|657748632|ref|XP_008309655.1| | PREDICTED: LOW QUALITY PROTEIN: programmed cell death protein 2-like [Cynoglossus semilaevis] | 0.0 |
| pfu_aug2.0_310.1_00583.t1 | gi|697000333|ref|XP_009566232.1| | PREDICTED: programmed cell death protein 2-like [Cuculus canorus] | 0.0 |
| pfu_aug2.0_310.1_00583.t1 | gi|557020192|ref|XP_006010428.1| | PREDICTED: programmed cell death protein 2-like isoform X1 [Latimeria chalumnae] | 0.0 |
| pfu_aug2.0_310.1_00583.t1 | gi|657550536|ref|XP_008279861.1| | PREDICTED: programmed cell death protein 2-like [Stegastes partitus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_310.1_00583.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_310.1_00583.t1 atgagtttgaaatatttgtgctcgatacgtcttcgacttacctgtactttcggttcgcaaagcagcatggcatttcttgg catagaagatggtcttattggaccaaatagcgagtcttcgtggaacctgaacaaaataggagggtctcctgattggatga agataccagagaagttgccatgctgtcctaactgtgggaacaccttactactgatcatgcagttatattgcccattagga gattcctgttaccatagaactctgtatatctttgcatgcaagagtaaatcttgctggtcctcccctactagctggttggt tttaagatcccagataatagatgaaagtagaatctcaacaaacaagccaagtcaagtcactgaaaaaatgttcgaaactg aagatgactggggtgtagatgacgatgactggggagatgaaaaagaagatgattcggaaatggataaagttagcgaatgg gatactattacctccgaacctgtagcagattcaataagtgagatttgtccttcgaatcattttgaagttgaaagtgaaca aaaaagagattgttctgatgaaaatcgtggaaagataaaagggaatgaaaatgtatttgaaggaaagctgagtgtcggta ttgaaaatcttaatatcaaacatgatcagacaggtgctgaaaaccatgttggaccgaagtatgattgtttggttgctcgt tatgttaatgtgattgacgaacctagctcatgtgagaatgatgacaatcatgtgcaaaaacttttgcgtgaatatgaaag aactgaagggtcagtcatgtcatcattggatgatgcagatagtaggtcgtcagcagatgagaaatatgaaaaagatgaca tcagacatggggacaaagttttccatcattttacaaagcaggtctccaactgtccacagcaatgtataaggtatcagtgg aatggtacaccactgtatataagcactcccacacctgatgttctaaacgcaggaaagatactatgtaaatactgtggggc tccattagtatttgaattgcagttaatgccagcattagtcaactatttaaagttaccagaccaatcagaatcagcagtgg agtttggcactgtgcttgtctatacctgtaaggcaagttgttggtccgacagtgataccatacggcatgaaactgtagtg gtacaacaggaccctgatcaacatctattcaaataa |
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Protein
| Protein ID | pfu_aug2.0_310.1_00583.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_310.1_00583.t1 MSLKYLCSIRLRLTCTFGSQSSMAFLGIEDGLIGPNSESSWNLNKIGGSPDWMKIPEKLPCCPNCGNTLLLIMQLYCPLG DSCYHRTLYIFACKSKSCWSSPTSWLVLRSQIIDESRISTNKPSQVTEKMFETEDDWGVDDDDWGDEKEDDSEMDKVSEW DTITSEPVADSISEICPSNHFEVESEQKRDCSDENRGKIKGNENVFEGKLSVGIENLNIKHDQTGAENHVGPKYDCLVAR YVNVIDEPSSCENDDNHVQKLLREYERTEGSVMSSLDDADSRSSADEKYEKDDIRHGDKVFHHFTKQVSNCPQQCIRYQW NGTPLYISTPTPDVLNAGKILCKYCGAPLVFELQLMPALVNYLKLPDQSESAVEFGTVLVYTCKASCWSDSDTIRHETVV VQQDPDQHLFK |
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