Gene
| Gene Model ID | pfu_aug2.0_308.1_27202 |
|---|---|
| Locus | scaffold308.1 : 260353 ... 268754 : - |
| To GenomeBrowser | scaffold308.1:260353..268754 |
| Genes list of scaffold | scaffold308.1 |
| Synonym | NA |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_308.1_27202.t1 | 7 | 1 | WD40 | 13 | 48 | 2.5e-30 | 103.2 | 8.0e-10 | 5.9e-06 | 25.9 |
| pfu_aug2.0_308.1_27202.t1 | 7 | 2 | WD40 | 56 | 92 | 2.5e-30 | 103.2 | 2.3e-09 | 1.7e-05 | 24.4 |
| pfu_aug2.0_308.1_27202.t1 | 3 | 1 | Nup160 | 69 | 104 | 2.1e-06 | 26.2 | 9.7e-08 | 0.00072 | 17.8 |
| pfu_aug2.0_308.1_27202.t1 | 7 | 3 | WD40 | 96 | 132 | 2.5e-30 | 103.2 | 1.3e-07 | 0.00096 | 18.9 |
| pfu_aug2.0_308.1_27202.t1 | 7 | 4 | WD40 | 178 | 188 | 2.5e-30 | 103.2 | 0.00022 | 1.7 | 8.6 |
| pfu_aug2.0_308.1_27202.t1 | 3 | 2 | Nup160 | 179 | 197 | 2.1e-06 | 26.2 | 0.0032 | 24.0 | 2.8 |
| pfu_aug2.0_308.1_27202.t1 | 7 | 5 | WD40 | 193 | 203 | 2.5e-30 | 103.2 | 0.014 | 100.0 | 3.0 |
| pfu_aug2.0_308.1_27202.t1 | 7 | 6 | WD40 | 205 | 215 | 2.5e-30 | 103.2 | 0.00026 | 1.9 | 8.4 |
| pfu_aug2.0_308.1_27202.t1 | 3 | 3 | Nup160 | 206 | 224 | 2.1e-06 | 26.2 | 0.0019 | 14.0 | 3.6 |
| pfu_aug2.0_308.1_27202.t1 | 7 | 7 | WD40 | 220 | 255 | 2.5e-30 | 103.2 | 1.1e-10 | 8.3e-07 | 28.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_308.1_27202.t1 | gi|676468505|ref|XP_009058230.1| | hypothetical protein LOTGIDRAFT_217484 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_308.1_27202.t1 | gi|632938732|ref|XP_007906161.1| | PREDICTED: WD repeat-containing protein 61 [Callorhinchus milii] | 0.0 |
| pfu_aug2.0_308.1_27202.t1 | gi|638279622|ref|NP_001279580.1| | WD repeat domain 61 [Callorhinchus milii] | 0.0 |
| pfu_aug2.0_308.1_27202.t1 | gi|260803284|ref|XP_002596520.1| | hypothetical protein BRAFLDRAFT_127963 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_308.1_27202.t1 | gi|390332820|ref|XP_791722.3| | PREDICTED: WD repeat-containing protein 61 [Strongylocentrotus purpuratus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_308.1_27202.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_308.1_27202.t1 atgcatgttgtgtattcgatcatatacaaacaagaaaatgcccatgaggatagtatatggagttgtgcttggcagcagag tgaacgagatcgttcagaaaatatcgtgacaggaggaattgatgacatggtcaaaatatggaagtgggttggagaaaaat tagagctgcgtcatgttttggagggtcaccaacttggagtggtctcagtagatatgaatttaggaggaacattggctgca tccagtagtttagacagtcatgttagagtatgggacgtggatacaggcaaatgtataaaaagtatggatgctggaccagt ggatgcatggacgatagctttctcaccagattctaggttcttggcttctggaagtcatacgggcaaaattaacttgtttg gagttgattcagggaggaaggaatcctcgttagatacaaggggcaaattcacactcagcatcgcttatgttagactgtat ttcaattttccatacataaatgccgatgtgaatgtaaaggaagggggaggcagttcttcagataaaacagtaaagatatg gaatgctgggtccagacagtgtgtacacacgttttacgaacattctgatcagagttcttcagataaaacagtaaagatat ggaatgctgggtccagacagtgtgtacacacgttttacgaacattctgatcaggtttggagtaccaaatataatcacagt ggatcaaaaatagtctctgtgtcagacgacaaaggcatacatatctgtgactgtcctccgatttaa |
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Protein
| Protein ID | pfu_aug2.0_308.1_27202.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_308.1_27202.t1 MHVVYSIIYKQENAHEDSIWSCAWQQSERDRSENIVTGGIDDMVKIWKWVGEKLELRHVLEGHQLGVVSVDMNLGGTLAA SSSLDSHVRVWDVDTGKCIKSMDAGPVDAWTIAFSPDSRFLASGSHTGKINLFGVDSGRKESSLDTRGKFTLSIAYVRLY FNFPYINADVNVKEGGGSSSDKTVKIWNAGSRQCVHTFYEHSDQSSSDKTVKIWNAGSRQCVHTFYEHSDQVWSTKYNHS GSKIVSVSDDKGIHICDCPPI |
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