Gene
| Gene Model ID | pfu_aug2.0_308.1_27200 |
|---|---|
| Locus | scaffold308.1 : 211385 ... 230264 : - |
| To GenomeBrowser | scaffold308.1:211385..230264 |
| Genes list of scaffold | scaffold308.1 |
| Synonym | pfu_aug1.0_2407.1_15798 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_308.1_27200.t1 | 1 | 1 | Glyco_transf_21 | 429 | 586 | 8.6e-08 | 31.6 | 1.0e-10 | 1.9e-07 | 30.5 |
| pfu_aug2.0_308.1_27200.t1 | 1 | 1 | Glyco_tranf_2_3 | 437 | 587 | 3.4e-11 | 43.3 | 3.4e-14 | 6.4e-11 | 42.4 |
| pfu_aug2.0_308.1_27200.t1 | 1 | 1 | Chitin_synth_2 | 437 | 726 | 6.6e-28 | 97.3 | 7.8e-31 | 1.4e-27 | 96.2 |
| pfu_aug2.0_308.1_27200.t1 | 2 | 1 | Glyco_trans_2_3 | 438 | 699 | 1.9e-14 | 53.8 | 1.0e-17 | 1.9e-14 | 53.8 |
| pfu_aug2.0_308.1_27200.t1 | 2 | 1 | SAM_1 | 818 | 877 | 1.0e-12 | 48.0 | 6.7e-09 | 1.2e-05 | 25.3 |
| pfu_aug2.0_308.1_27200.t1 | 2 | 1 | SAM_2 | 818 | 877 | 1.6e-13 | 50.2 | 4.4e-07 | 0.00082 | 19.1 |
| pfu_aug2.0_308.1_27200.t1 | 2 | 2 | SAM_2 | 887 | 944 | 1.6e-13 | 50.2 | 3.5e-10 | 6.5e-07 | 29.1 |
| pfu_aug2.0_308.1_27200.t1 | 2 | 2 | SAM_1 | 888 | 936 | 1.0e-12 | 48.0 | 2.2e-07 | 0.0004 | 20.4 |
| pfu_aug2.0_308.1_27200.t1 | 2 | 2 | Glyco_trans_2_3 | 1002 | 1020 | 1.9e-14 | 53.8 | 8.0 | 15000.0 | -4.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_308.1_27200.t1 | gi|597779313|ref|XP_007253266.1| | PREDICTED: uncharacterized protein LOC103041484 [Astyanax mexicanus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_308.1_27200.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_308.1_27200.t1 atgagtgctttggaatgtttaggaacgtgttgtttcctgttcgttaccttacagacaaactttgcagcgatctcccttct tctcatggattcagtgtttatactaccgacaattagtgttgctttccagtatttccagactaatcaaacggaaagaagtt ctcgtacaactattggtcaggtaattggaccaatttcagccgtttttggagtcgctggaacagggtacttattgtttaag catataattgacaatagttaccaatttataggtctaactgctgttggggtcatttgcatttctgcttcatggatgccatg gattttaaaaggaatgatgaaaataaagagacctacaacaaccagtagtgaagctaattcgtcacaagaaaattcattcg agtcagctgtgagttcctccacgagcacatacgtcagttcaggctacatgacaagtacagaaagatctgcatctttgaaa aattcgtacggatcgatggaatcaaatgaaacctcggctcttcatgaatctttttcggaatcagcgaaagatataaacat ggtcgaatccctacaaaatttacatgaatactcggaaaatcattcacattggaaaacgctcaccatttcgtcttttacaa aatgtgttctagtgataccattctctttgattataaatgttatatttcctatgattgatatagatgaattcccaggggga tgggactgggtatttgacgatcaaacaacattgtttctagtcaatatctcatgttccctaattggatactttttgtgcgt atttgcatgtaggacatgttcagatataggaggatttgcgataccgttgattctggctcccttgctggtctaccttcctc agctgtcccaaacttcctgtgaatttagcttgactttaggtatgagtctacagacaaattcattttgccaaataccgagt gatagtttatggcttttcctggcgtcagcggctgcactattaatagctcgggcgtcctcgttgggaattctggctttcaa gagaaaccgtatagttctggaaaaagagacgaagaatcgcacagaaatggcacagttactcaggtcgatatgggctgtta atatagaacacaagagagctgaacaaagacttgatgaagagaatgaaggaaaagggaacatatatggtaaacgagatttt gagtctcatatcttccttgatggtgcagtgaggggaggggatatgcaggacaacgcattgcagctagtcagtttgcttaa tgaatgtttagacaaagatgaagacttgtttattctgaccacggatgcagacgtcaagtttaagtttacagacgtccaag cattactagacctgatgatgcgtgatccaagtgtgggagctgtatgcgcgcgcacataccccctcggtggcggtccactg gtgtggtatcaaaaatttgagtatgctataggacattggtttcaaaaggctgctgaacatgttcttggatcagttttgtg tgcgccaggatgcttcagtgtttacagatgttcggcattaagggacatagtaccaacatacgcttctgatgtagagagag cctttgagtttttgataaaggacatgggagaagacagatggctgtgtacacttatggtacagagtggatggagaatcgaa tattgcgcagcatctacaaatgagacatactgtcccgaggagtttgacgagttcttcaagcagagaagacggtgggtggc ctcaacattggctaatatctggaaggcaggaaagatcctaacgttcgtttatgcccttgttatgacggcggtagctgttg gtatcgctaagactgtcgccattgactttgctacccacgaggaaatcaaactggcagagaactctacggaggaaatcaag tctaccaaaagtccacaagcaataagtgaaagtttcgactactctgtgacaacgctctacctcggcagtctggctgccat cttcctagctactggcatctttcatctaaaggaagtgacgatccttgtatacggtttgacttacctgttatgtctgccct cctgttacctgattctgatgatttactgtgtttgtaacatcactgatcgatcttggggcacacgagaggaaaaaacggaa gatgaccccaaaggaaacgctcgcaaaacatggcacgaacaagtgggaaatgttcttcgtaatatatttttctgttgtga caagggacaacaagagacagataacggtcaagctgtactaccgaggtcacatagatcagactcatccagcagttcatcag gaggcgaccatttgaaaaggcagacctcaaaacaaccaatggcaaatgttccggaggaggacatagaaactgaaatagag accagctttagtcatcaacagccagatgattcagattacgttgagatacttactgtggatgaatggttagacgaggaaga attgagaagaaagtacagcgctaaattcaaagccaacggctacgagaacacgatttttatttcaatgctgacagacagaa ctctgaggaaaattattggagtggatattttagctcatagaaatcattttcttgaaaagatagacaaacttccgcaatac aaaatagagatcgacgtcccggaaaacgtagaatcatggcttgtgagcataggtcttgagaagtaccgaaagaatttcaa ggatatcaagattgtatcatccaaacaactagagacgctgaaatcaatgaaagagcacgagttaagaaaagacctcaaaa ttactaaacacgaggagcgcagaataattcaaatcaaagatcagctgaagaatgcatacacacatgaactgtcgaaagtt aacaaagaagaacataagttttgggcggacatcatcaaggcctgtctggagccaaactctaatgcctttggacagttggc agagcttaagaaggatttagagaagctgcgttttaatgcactgatagtggctggtatagttaactgcctttggcttgtgc tggctttgacccttgccggtagcgctgacttgaccacggctggaacaaatcccctaggtctggtcttccttatagtgttt ggatttattttcatcatacagtttctgtgtatgctggtccatagaatggagacactgtctcattttgtggccagattacc atacaagttcaagagcaattataaaccatcaggttcctctgaacagaatgatccggacgtcgatcaagctttaaaggaag tctcagaggcagagaggacagccagaaaacgacaaaaagaaaaacaacataaacaaaggactttgaaacgaaatcagaaa ctagatcaaataccggaaacagaaaattctccactccttgccgcaccagaaataagtgcttag |
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Protein
| Protein ID | pfu_aug2.0_308.1_27200.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_308.1_27200.t1 MSALECLGTCCFLFVTLQTNFAAISLLLMDSVFILPTISVAFQYFQTNQTERSSRTTIGQVIGPISAVFGVAGTGYLLFK HIIDNSYQFIGLTAVGVICISASWMPWILKGMMKIKRPTTTSSEANSSQENSFESAVSSSTSTYVSSGYMTSTERSASLK NSYGSMESNETSALHESFSESAKDINMVESLQNLHEYSENHSHWKTLTISSFTKCVLVIPFSLIINVIFPMIDIDEFPGG WDWVFDDQTTLFLVNISCSLIGYFLCVFACRTCSDIGGFAIPLILAPLLVYLPQLSQTSCEFSLTLGMSLQTNSFCQIPS DSLWLFLASAAALLIARASSLGILAFKRNRIVLEKETKNRTEMAQLLRSIWAVNIEHKRAEQRLDEENEGKGNIYGKRDF ESHIFLDGAVRGGDMQDNALQLVSLLNECLDKDEDLFILTTDADVKFKFTDVQALLDLMMRDPSVGAVCARTYPLGGGPL VWYQKFEYAIGHWFQKAAEHVLGSVLCAPGCFSVYRCSALRDIVPTYASDVERAFEFLIKDMGEDRWLCTLMVQSGWRIE YCAASTNETYCPEEFDEFFKQRRRWVASTLANIWKAGKILTFVYALVMTAVAVGIAKTVAIDFATHEEIKLAENSTEEIK STKSPQAISESFDYSVTTLYLGSLAAIFLATGIFHLKEVTILVYGLTYLLCLPSCYLILMIYCVCNITDRSWGTREEKTE DDPKGNARKTWHEQVGNVLRNIFFCCDKGQQETDNGQAVLPRSHRSDSSSSSSGGDHLKRQTSKQPMANVPEEDIETEIE TSFSHQQPDDSDYVEILTVDEWLDEEELRRKYSAKFKANGYENTIFISMLTDRTLRKIIGVDILAHRNHFLEKIDKLPQY KIEIDVPENVESWLVSIGLEKYRKNFKDIKIVSSKQLETLKSMKEHELRKDLKITKHEERRIIQIKDQLKNAYTHELSKV NKEEHKFWADIIKACLEPNSNAFGQLAELKKDLEKLRFNALIVAGIVNCLWLVLALTLAGSADLTTAGTNPLGLVFLIVF GFIFIIQFLCMLVHRMETLSHFVARLPYKFKSNYKPSGSSEQNDPDVDQALKEVSEAERTARKRQKEKQHKQRTLKRNQK LDQIPETENSPLLAAPEISA |
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