Gene
| Gene Model ID | pfu_aug2.0_2844.1_15643 |
|---|---|
| Locus | scaffold2844.1 : 21886 ... 39328 : + |
| To GenomeBrowser | scaffold2844.1:21886..39328 |
| Genes list of scaffold | scaffold2844.1 |
| Synonym | pfu_aug1.0_21959.1_54805 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| rna-binding protein 39 isoform x5 | GO:0003676 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_2844.1_15643.t3 | 3 | 1 | RRM_1 | 124 | 164 | 9.4e-31 | 105.2 | 3.9e-07 | 0.0012 | 18.4 |
| pfu_aug2.0_2844.1_15643.t3 | 3 | 1 | RRM_6 | 124 | 163 | 1.5e-20 | 72.9 | 2.9e-05 | 0.086 | 12.8 |
| pfu_aug2.0_2844.1_15643.t3 | 3 | 1 | RRM_5 | 141 | 152 | 8.2e-18 | 64.0 | 0.45 | 1300.0 | -0.8 |
| pfu_aug2.0_2844.1_15643.t3 | 3 | 2 | RRM_1 | 204 | 274 | 9.4e-31 | 105.2 | 1.7e-26 | 5.1e-23 | 80.4 |
| pfu_aug2.0_2844.1_15643.t3 | 3 | 2 | RRM_6 | 204 | 272 | 1.5e-20 | 72.9 | 5.9e-18 | 1.8e-14 | 53.4 |
| pfu_aug2.0_2844.1_15643.t3 | 3 | 2 | RRM_5 | 220 | 275 | 8.2e-18 | 64.0 | 1.6e-16 | 4.7e-13 | 48.7 |
| pfu_aug2.0_2844.1_15643.t3 | 1 | 1 | RBM39linker | 291 | 388 | 3.2e-24 | 85.0 | 1.2e-26 | 3.4e-23 | 81.7 |
| pfu_aug2.0_2844.1_15643.t3 | 3 | 3 | RRM_1 | 454 | 488 | 9.4e-31 | 105.2 | 0.036 | 110.0 | 2.5 |
| pfu_aug2.0_2844.1_15643.t3 | 3 | 3 | RRM_6 | 457 | 488 | 1.5e-20 | 72.9 | 0.034 | 100.0 | 2.9 |
| pfu_aug2.0_2844.1_15643.t3 | 3 | 3 | RRM_5 | 458 | 492 | 8.2e-18 | 64.0 | 8.3e-05 | 0.24 | 11.2 |
Transcript
| Transcript ID | pfu_aug2.0_2844.1_15643.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2844.1_15643.t1 atgttcttcttcatgagcactgtgacaatcctatctcaagaccagggtcattcatgcggaaagggagttgaccaattaca gcggattttacttgtactggatgacggacgaggggatgcttccactgacagagaaagaaggaaaaggagcagaagtagag acagaaaggaaaaagacagagataggaaaaggagcagaagtagggatcgttctcggagggaccgtgatcctgtgaatgag tatattaacaaaaaatctacaactaacagattaccagacagaccagaattaacgccagaggaaagagatgccaggactgt gttctgcatgcagctgtcagctagaatccgacccagagatctagaggaattcttctcatctgtagggaaggttcgagatg tgcgtcagattatggacaataaaactagaagatcaaaaggtttaacgggtcagaaactattaggtgttcccattatagtc caaccatcacaagcagagaagaacagagctgctaacatgggcaatatcacacaaaaaggagccactgggccaatgaggtt atacgttggatcattacattttaatataacagaagatatgctcaggggaatttttgaaccatttgggaagattgatgaca tcaaattgattcatgaccacggcacaactagaacgcagggatacgggtttgtcacgtttcataatgctgatgatgccaag aaggccttggagcagttgaacggctttgagctggcaggacgaccaatgaaagtaggtcatgtgacggaacggcagggcga catacaggcaggttctgtactggacagtgacgagatggatagagctggtatagacctcggtgccacgggtagactgcagc tgatggccaaactagcagaaggaacgggctttcagatccctgagtatgcagcgtcagccttaaacatgagtgccaccaca ccagcagcggcggcaccaggagttgctgggaacgtgtcagccatcatgggtggccagacagcggcaccgaatgctgcggc tccacctatagccacacagtgtttcatgctctccaatatgtttgatcctacagtagaatcacgacagagttgggatcagg aaatccgggatgatgtaatagaagaatgtaacaagcacggtggtgtgctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnacatatatacgtcgataaagcttctcctcagggcaacgtgtacgttaaatgtcccaccatagctgctg ctgtagcctctgtcaatgctctacatggacggtattttggaggtaaaatgatcacagcagcatatgttcctctccccaac taccacgccctttttacggacgctgtgcgtgccaaccagctcttactaccctcaacacaagctctccaagcaggattccc caacacaatgttctcatccgtacaacccggagccattagataa |
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| Transcript ID | pfu_aug2.0_2844.1_15643.t2 |
| Definition | - |
>pfu_aug2.0_2844.1_15643.t2 atgacggacgaggggatgcttccactgacagagaaagaaggaaaaggagcagaagtagagacagaaaggaaaaagacaga gataggaaaaggagcagaagtagggatcgttctcggagggaccgtgatcagattaccagacagaccagaattaacgccag aggaaagagatgccaggactgtgttctgcatgcagctgtcagctagaatccgacccagagatctagaggaattcttctca tctgtagggaaggttcgagatgtgcgtcagattatggacaataaaactagaagatcaaaaggtttaacgggtcagaaact attaggtgttcccattatagtccaaccatcacaagcagagaagaacagagctgctaacatgggcaatatcacacaaaaag gagccactgggccaatgaggttatacgttggatcattacattttaatataacagaagatatgctcaggggaatttttgaa ccatttgggaagattgatgacatcaaattgattcatgaccacggcacaactagaacgcagggatacgggtttgtcacgtt tcataatgctgatgatgccaagaaggccttggagcagttgaacggctttgagctggcaggacgaccaatgaaagtaggtc atgtgacggaacggcagggcgacatacaggcaggttctgtactggacagtgacgagatggatagagctggtatagacctc ggtgccacgggtagactgcagctgatggccaaactagcagaaggaacgggctttcagatccctgagtatgcagcgtcagc cttaaacatgagtgccaccacaccagcagcggcggcaccaggagttgctgggaacgtgtcagccatcatgggtggccaga cagcggcaccgaatgctgcggctccacctatagccacacagtgtttcatgctctccaatatgtttgatcctacagtagaa tcacgacagagttgggatcaggaaatccgggatgatgtaatagaagaatgtaacaagcacggtggtgtgctnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacatatatacgtcgataaagcttctcctcagggcaacgtgtacgtt aaatgtcccaccatagctgctgctgtagcctctgtcaatgctctacatggacggtattttggaggtaaaatgatcacagc agcatatgttcctctccccaactaccacgccctttttacggacgctgtgcgtgccaaccagctcttactaccctcaacac aagctctccaagcaggattccccaacacaatgttctcatccgtacaacccggagccattagataa |
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| Transcript ID | pfu_aug2.0_2844.1_15643.t3 |
| Definition | - |
>pfu_aug2.0_2844.1_15643.t3 atgcttggggctagtagaaatgtgtctaacaaactatacaggccggtagaatttgtctttgggttattggttcactcaag ttttcttgaagatcagacaatccgaaagtcaccagacatatcaggcaaacctggtaaaatttgcttcagtctaaaaattg ggtggggactagaaaatagggaaaagaggatgacggacgaggggatgcttccactgacagagaaagaaggaaaaggagca gaagtagagacagaaaggaaaaagacagagataggaaaaggagcagaagtagggatcgttctcggagggaccgtgatcag attaccagacagaccagaattaacgccagaggaaagagatgccaggactgtgttctgcatgcagctgtcagctagaatcc gacccagagatctagaggaattcttctcatctgtagggaaggttcgagatgtgcgtcagattatggacaataaaactaga agatcaaaaggtttaacgggtcagaaactattaggtgttcccattatagtccaaccatcacaagcagagaagaacagagc tgctaacatgggcaatatcacacaaaaaggagccactgggccaatgaggttatacgttggatcattacattttaatataa cagaagatatgctcaggggaatttttgaaccatttgggaagattgatgacatcaaattgattcatgaccacggcacaact agaacgcagggatacgggtttgtcacgtttcataatgctgatgatgccaagaaggccttggagcagttgaacggctttga gctggcaggacgaccaatgaaagtaggtcatgtgacggaacggcagggcgacatacaggcaggttctgtactggacagtg acgagatggatagagctggtatagacctcggtgccacgggtagactgcagctgatggccaaactagcagaaggaacgggc tttcagatccctgagtatgcagcgtcagccttaaacatgagtgccaccacaccagcagcggcggcaccaggagttgctgg gaacgtgtcagccatcatgggtggccagacagcggcaccgaatgctgcggctccacctatagccacacagtgtttcatgc tctccaatatgtttgatcctacagtagaatcacgacagagttgggatcaggaaatccgggatgatgtaatagaagaatgt aacaagcacggtggtgtgctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacatatatacgtcgata aagcttctcctcagggcaacgtgtacgttaaatgtcccaccatagctgctgctgtagcctctgtcaatgctctacatgga cggtattttggaggtaaaatgatcacagcagcatatgttcctctccccaactaccacgccctttttacggacgctgtgcg tgccaaccagctcttactaccctcaacacaagctctccaagcaggattccccaacacaatgttctcatccgtacaacccg gagccattagataa |
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Protein
| Protein ID | pfu_aug2.0_2844.1_15643.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2844.1_15643.t1 MFFFMSTVTILSQDQGHSCGKGVDQLQRILLVLDDGRGDASTDRERRKRSRSRDRKEKDRDRKRSRSRDRSRRDRDPVNE YINKKSTTNRLPDRPELTPEERDARTVFCMQLSARIRPRDLEEFFSSVGKVRDVRQIMDNKTRRSKGLTGQKLLGVPIIV QPSQAEKNRAANMGNITQKGATGPMRLYVGSLHFNITEDMLRGIFEPFGKIDDIKLIHDHGTTRTQGYGFVTFHNADDAK KALEQLNGFELAGRPMKVGHVTERQGDIQAGSVLDSDEMDRAGIDLGATGRLQLMAKLAEGTGFQIPEYAASALNMSATT PAAAAPGVAGNVSAIMGGQTAAPNAAAPPIATQCFMLSNMFDPTVESRQSWDQEIRDDVIEECNKHGGVXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHIYVDKASPQGNVYVKCPTIAAAVASVNALHGRYFGGKMITAAYVPLPN YHALFTDAVRANQLLLPSTQALQAGFPNTMFSSVQPGAIR |
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| Protein ID | pfu_aug2.0_2844.1_15643.t2 |
| Definition | - |
>pfu_aug2.0_2844.1_15643.t2 MTDEGMLPLTEKEGKGAEVETERKKTEIGKGAEVGIVLGGTVIRLPDRPELTPEERDARTVFCMQLSARIRPRDLEEFFS SVGKVRDVRQIMDNKTRRSKGLTGQKLLGVPIIVQPSQAEKNRAANMGNITQKGATGPMRLYVGSLHFNITEDMLRGIFE PFGKIDDIKLIHDHGTTRTQGYGFVTFHNADDAKKALEQLNGFELAGRPMKVGHVTERQGDIQAGSVLDSDEMDRAGIDL GATGRLQLMAKLAEGTGFQIPEYAASALNMSATTPAAAAPGVAGNVSAIMGGQTAAPNAAAPPIATQCFMLSNMFDPTVE SRQSWDQEIRDDVIEECNKHGGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHIYVDKASPQGNVYV KCPTIAAAVASVNALHGRYFGGKMITAAYVPLPNYHALFTDAVRANQLLLPSTQALQAGFPNTMFSSVQPGAIR |
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| Protein ID | pfu_aug2.0_2844.1_15643.t3 |
| Definition | - |
>pfu_aug2.0_2844.1_15643.t3 MLGASRNVSNKLYRPVEFVFGLLVHSSFLEDQTIRKSPDISGKPGKICFSLKIGWGLENREKRMTDEGMLPLTEKEGKGA EVETERKKTEIGKGAEVGIVLGGTVIRLPDRPELTPEERDARTVFCMQLSARIRPRDLEEFFSSVGKVRDVRQIMDNKTR RSKGLTGQKLLGVPIIVQPSQAEKNRAANMGNITQKGATGPMRLYVGSLHFNITEDMLRGIFEPFGKIDDIKLIHDHGTT RTQGYGFVTFHNADDAKKALEQLNGFELAGRPMKVGHVTERQGDIQAGSVLDSDEMDRAGIDLGATGRLQLMAKLAEGTG FQIPEYAASALNMSATTPAAAAPGVAGNVSAIMGGQTAAPNAAAPPIATQCFMLSNMFDPTVESRQSWDQEIRDDVIEEC NKHGGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHIYVDKASPQGNVYVKCPTIAAAVASVNALHG RYFGGKMITAAYVPLPNYHALFTDAVRANQLLLPSTQALQAGFPNTMFSSVQPGAIR |
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