Gene
| Gene Model ID | pfu_aug2.0_27.1_23267 |
|---|---|
| Locus | scaffold27.1 : 241705 ... 250649 : + |
| To GenomeBrowser | scaffold27.1:241705..250649 |
| Genes list of scaffold | scaffold27.1 |
| Synonym | pfu_aug1.0_16.1_07307 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_27.1_23267.t1 | 1 | 1 | GSDH | 121 | 271 | 3.5e-09 | 36.1 | 1.1e-12 | 5.3e-09 | 35.6 |
| pfu_aug2.0_27.1_23267.t1 | 1 | 1 | NDUFA12 | 336 | 417 | 5.6e-14 | 52.4 | 2.4e-17 | 1.2e-13 | 51.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_27.1_23267.t1 | gi|260830196|ref|XP_002610047.1| | hypothetical protein BRAFLDRAFT_284814 [Branchiostoma floridae] | 4.0e-34 |
| pfu_aug2.0_27.1_23267.t1 | gi|663270187|ref|XP_008494690.1| | PREDICTED: HHIP-like protein 1 [Calypte anna] | 3.0e-33 |
| pfu_aug2.0_27.1_23267.t1 | gi|527262965|ref|XP_005149716.1| | PREDICTED: HHIP-like protein 1 [Melopsittacus undulatus] | 3.0e-33 |
| pfu_aug2.0_27.1_23267.t1 | gi|134026300|gb|AAI34905.1| | LOC100002738 protein [Danio rerio] | 4.0e-33 |
Transcript
| Transcript ID | pfu_aug2.0_27.1_23267.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_27.1_23267.t1 atgtgccagaaatgttctcaatattccgggaatttattcgatttctacggcaaatctccgcttccgggaatgtgtaaaag cgactgttacaatttttacaaaaagtgtaaatctgcgataaaatatttagtggggaaggacattaccctttatttcaagt acactttggggaagaaatcattctgcaagttcctacagccgttggacccagcttactgttatccgaaattcggaggaccg gaagcgatgaaaaaagaggaagaggaagcagctgaaaaagcgaaagaagaactagatacagccgaacttgaaaaacaaag cacctgcgtgtgttttgaacaaataaaaaaggattttcacgttcctgtggaccttacgtcacccaatgacggaagcaaac gaattttcgtgacggacttgagtggacagatatcggtttttgattctaacggaactgttataatgcacaattttttcaac cttgataaagaccttgtattccttccccagggtcctgaattggggtttctaggcgtaacggggttggcatttcatcctaa atttagaaagaatggtagattttttgtgtccttcacgatcaaagatcctgttgaagggtcggacgttctaagaattagtg aatataggctttttattcctcagctcttacaaaccattgactggaaaaaaggaaaagttattatgaatattccactcacc aaacaaaacaatgtcggtggagagcttctgtttggagacgatggttacctgatgattttcctaggagacaactcggatga cgtagatcctgatcgaatggcgcagaaaaagcctatcatgatatacgatcatcgttataaattatatgatggttatctat tctggtcaagaatagaggtgttaattagacagacacggtatgtttctggatcgtctaaacatataacaagaaattacggt atcaaaagtttctgggatagatttcgatcgaaattggaacaagaagggaagttagttggcgaggacttgtttggtaacaa atattacgaaaaggaattagtaaattcaacagatcgttcacgaaaaagtaagagatggattgagcgtgaggatgaccccg atcttgaccaacaatatcatcaagaatttgaaatgcccatcgaatggcgtgcatggctacaacataaacggagttcccct cctacagagatggagattaaaaagaatgttgccatgatgatgaggacaaagaagagagctgttgaagtagcagaaaggga agcaaaggagcgtgaggaaatgggacttgaaaaagttgatacctcaaaacttggagactcagaatttccaatttacccag aatatgaagttactccacaaattgggaaagatagatcaaaagacaaggatgttgatcaaatacctaaaaaatga |
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Protein
| Protein ID | pfu_aug2.0_27.1_23267.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_27.1_23267.t1 MCQKCSQYSGNLFDFYGKSPLPGMCKSDCYNFYKKCKSAIKYLVGKDITLYFKYTLGKKSFCKFLQPLDPAYCYPKFGGP EAMKKEEEEAAEKAKEELDTAELEKQSTCVCFEQIKKDFHVPVDLTSPNDGSKRIFVTDLSGQISVFDSNGTVIMHNFFN LDKDLVFLPQGPELGFLGVTGLAFHPKFRKNGRFFVSFTIKDPVEGSDVLRISEYRLFIPQLLQTIDWKKGKVIMNIPLT KQNNVGGELLFGDDGYLMIFLGDNSDDVDPDRMAQKKPIMIYDHRYKLYDGYLFWSRIEVLIRQTRYVSGSSKHITRNYG IKSFWDRFRSKLEQEGKLVGEDLFGNKYYEKELVNSTDRSRKSKRWIEREDDPDLDQQYHQEFEMPIEWRAWLQHKRSSP PTEMEIKKNVAMMMRTKKRAVEVAEREAKEREEMGLEKVDTSKLGDSEFPIYPEYEVTPQIGKDRSKDKDVDQIPKK |
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