Gene
| Gene Model ID | pfu_aug2.0_262.1_07263 |
|---|---|
| Locus | scaffold262.1 : 265352 ... 272372 : - |
| To GenomeBrowser | scaffold262.1:265352..272372 |
| Genes list of scaffold | scaffold262.1 |
| Synonym | pfu_aug1.0_6272.1_59985 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_262.1_07263.t1 | 3 | 1 | RRM_6 | 86 | 148 | 5.2e-22 | 77.6 | 5.8e-06 | 0.014 | 15.3 |
| pfu_aug2.0_262.1_07263.t1 | 3 | 1 | RRM_1 | 89 | 147 | 2.3e-30 | 104.0 | 2.9e-07 | 0.00071 | 19.1 |
| pfu_aug2.0_262.1_07263.t1 | 3 | 1 | RRM_5 | 97 | 150 | 2.5e-19 | 68.8 | 2.0e-07 | 0.0005 | 19.8 |
| pfu_aug2.0_262.1_07263.t1 | 3 | 2 | RRM_1 | 261 | 329 | 2.3e-30 | 104.0 | 3.4e-16 | 8.5e-13 | 47.7 |
| pfu_aug2.0_262.1_07263.t1 | 3 | 2 | RRM_6 | 261 | 315 | 5.2e-22 | 77.6 | 1.3e-10 | 3.2e-07 | 30.2 |
| pfu_aug2.0_262.1_07263.t1 | 3 | 2 | RRM_5 | 279 | 325 | 2.5e-19 | 68.8 | 0.0001 | 0.25 | 11.2 |
| pfu_aug2.0_262.1_07263.t1 | 3 | 3 | RRM_1 | 342 | 403 | 2.3e-30 | 104.0 | 9.7e-12 | 2.4e-08 | 33.4 |
| pfu_aug2.0_262.1_07263.t1 | 3 | 3 | RRM_6 | 342 | 402 | 5.2e-22 | 77.6 | 5.9e-10 | 1.5e-06 | 28.1 |
| pfu_aug2.0_262.1_07263.t1 | 3 | 3 | RRM_5 | 360 | 412 | 2.5e-19 | 68.8 | 6.4e-12 | 1.6e-08 | 34.2 |
| pfu_aug2.0_262.1_07263.t1 | 1 | 1 | SPOC | 552 | 679 | 2.1e-30 | 105.6 | 1.8e-33 | 4.5e-30 | 104.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_262.1_07263.t1 | gi|676429866|ref|XP_009045740.1| | hypothetical protein LOTGIDRAFT_224309 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_262.1_07263.t1 | gi|524908894|ref|XP_005109536.1| | PREDICTED: putative RNA-binding protein 15-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_262.1_07263.t1 | gi|391347173|ref|XP_003747839.1| | PREDICTED: putative RNA-binding protein 15B-like [Metaseiulus occidentalis] | 0.0 |
| pfu_aug2.0_262.1_07263.t1 | gi|189238786|ref|XP_974651.2| | PREDICTED: putative RNA-binding protein 15B [Tribolium castaneum] | 0.0 |
| pfu_aug2.0_262.1_07263.t1 | gi|751470799|ref|XP_011190647.1| | PREDICTED: putative RNA-binding protein 15 [Bactrocera cucurbitae] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_262.1_07263.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_262.1_07263.t1 atgaaacgttcagttgaacgagacctctccccagggaggatgaagcgttcccgttatattgtcccagaatattctatgcg agacaaatcgccacctgactttgatcgaatgcgtggtcgtgaacctaaacccaaatactatgatgacttgcgtcctaaat atcgagatgaccgcatcgttgatgattacggcggccccttaagaactgaagctagggttcccgaatatcgctctctttgt ctgagtaacatttccagtaaaattccagatcatgtcttgaaagaggccctgtacagggaatttaagaaattcggagagtt taatgtgaatgtcacatacagtggagaagtaagggttgcgtatataaacttcagatatccggaagatgcaagagaagcaa agcacgctaaacaaaagcttatgttatttgaaagaccagtgcgtgtggaatctgtgtatcacaaaaagtacaatacgcca agttccaatggtggaggatcaggatattatccacctcgtgatcattatccccctcctggtccaccacgcggcatgtcacc acctccatttcagcgccgccccagttatcatcaaggaccagatccagggatgcccccaaaacgtgactataatctgcagt atcagaaaggtggtggtggtggtggtggtggtggcagtcaacatggccaagacagttacaacagacgtgctccaaatgaa aaatttccatatcatttagatcacattccacctgaagatgatgataaagcgacaagaacgttatttgttggaaatcttga ctacaacattgatgaaccagaactgagaggtgtatttgacagatatggtggaattgaagagattgatataaaaaggccag ctctgggcaaaggaaatgcttatgcttttatcaaatttctgaatctggattgtgctcatcgtgcaaaagtatccatgtct ggagagtatataggacgctttcagtgcaagattggttatggcaaagtgactccaagtacatgtctatgggtgggtggtct aggtccttgggtgactcatcagatgttggaaagagaatttgatcgttttggtgttattgaccgcattgtgtggccacaag gaaaaaattatgcgtatgtgttgtatgacaacatcgatgcagcacaagttgcaatcaatgaaatgcgtggtgctccatta ggtggaaacgatcgaagacttcgtgtggatttcgctgatgtaaatcacgtaacaaatgattcaaagatgtcggagaatgg aagaggatattctggtggacaaggtggaagtccatggaaaggacagtatgatgaaagaaggagggaatcatgggaaagag atccacaccgtaatcctgacggtccaagagaggacagaaggcgagatgaccttgaccctagaatagatgaccgatatcga cgtagaagtcctgattttcctgataagagaagacactcacctgataggtatgatggtggttcattaagtagagagaatag acgatctgtacattcacaggatggtatggatgacgagagaaggacacgccgaatgtctggaacaggagaaactgtgggtg atatctcagaagtggagaatatccaagaaatggcacgttgtctgcaagtggcatggaatggtgcagtgattcttaaaagt agtgctttcccggctcgtatgcatgtagttagtggtgatgtgaccaccgtggatacactcatgagagatccaacaacaac agaaacaccaacgcttaaaataaaacaacgtctacgtctagaccaatcaaagctagaggacgtaggacgcagagtgtctg cagcagggagaagtggtcattgtattttacttgctttacctagttcattgcaaaattatgatgacccatcagtgcagcag agacccctgaaaaacctggttacatatttacgacaaaaagatgcagctggagtgatctcccttccaccatacaatacaaa agataaagacaacgttggagtgttgtacgcgtttccgccatgtcagtttgggtatgattacttgtcacaagtagcaccta ggtttccgagagagctcgtagttgatgactatctcattatagtcgttatcaggggtgctgtgtag |
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Protein
| Protein ID | pfu_aug2.0_262.1_07263.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_262.1_07263.t1 MKRSVERDLSPGRMKRSRYIVPEYSMRDKSPPDFDRMRGREPKPKYYDDLRPKYRDDRIVDDYGGPLRTEARVPEYRSLC LSNISSKIPDHVLKEALYREFKKFGEFNVNVTYSGEVRVAYINFRYPEDAREAKHAKQKLMLFERPVRVESVYHKKYNTP SSNGGGSGYYPPRDHYPPPGPPRGMSPPPFQRRPSYHQGPDPGMPPKRDYNLQYQKGGGGGGGGGSQHGQDSYNRRAPNE KFPYHLDHIPPEDDDKATRTLFVGNLDYNIDEPELRGVFDRYGGIEEIDIKRPALGKGNAYAFIKFLNLDCAHRAKVSMS GEYIGRFQCKIGYGKVTPSTCLWVGGLGPWVTHQMLEREFDRFGVIDRIVWPQGKNYAYVLYDNIDAAQVAINEMRGAPL GGNDRRLRVDFADVNHVTNDSKMSENGRGYSGGQGGSPWKGQYDERRRESWERDPHRNPDGPREDRRRDDLDPRIDDRYR RRSPDFPDKRRHSPDRYDGGSLSRENRRSVHSQDGMDDERRTRRMSGTGETVGDISEVENIQEMARCLQVAWNGAVILKS SAFPARMHVVSGDVTTVDTLMRDPTTTETPTLKIKQRLRLDQSKLEDVGRRVSAAGRSGHCILLALPSSLQNYDDPSVQQ RPLKNLVTYLRQKDAAGVISLPPYNTKDKDNVGVLYAFPPCQFGYDYLSQVAPRFPRELVVDDYLIIVVIRGAV |
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