Gene
| Gene Model ID | pfu_aug2.0_252.1_07237 |
|---|---|
| Locus | scaffold252.1 : 270412 ... 271877 : - |
| To GenomeBrowser | scaffold252.1:270412..271877 |
| Genes list of scaffold | scaffold252.1 |
| Synonym | pfu_aug1.0_20968.1_54723 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| acetylcholine receptor subunit beta isoform x1 | GO:0016020 GO:0044763 GO:0044765 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_252.1_07237.t1 | 1 | 1 | Neur_chan_LBD | 27 | 228 | 5.99756e-43 | 146.5 | 0.0 | 7.30076e-43 | 146.2 |
| pfu_aug2.0_252.1_07237.t1 | 2 | 1 | Neur_chan_memb | 49 | 61 | 1.1e-07 | 32.0 | 0.79 | 5800.0 | -3.2 |
| pfu_aug2.0_252.1_07237.t1 | 2 | 2 | Neur_chan_memb | 236 | 318 | 1.1e-07 | 32.0 | 1.4e-11 | 1.1e-07 | 32.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_252.1_07237.t1 | gi|736172909|ref|XP_010766377.1| | PREDICTED: acetylcholine receptor subunit beta [Notothenia coriiceps] | 0.0 |
| pfu_aug2.0_252.1_07237.t1 | gi|734631321|ref|XP_010744041.1| | PREDICTED: acetylcholine receptor subunit beta-like [Larimichthys crocea] | 0.0 |
| pfu_aug2.0_252.1_07237.t1 | gi|554860316|ref|XP_005940279.1| | PREDICTED: acetylcholine receptor subunit beta-like [Haplochromis burtoni] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_252.1_07237.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_252.1_07237.t1 atgtattcgaatctgtttgtgactgcttttatcatttcattgttttgtttctgtgaagggacaaacttctctacagtgga gaaacttcgtagtgatctattaacaggctatgaaccaagtttgagacctggaactgaccagtccattcctcttaatattt ctgttggtctcagtatgaccttactacgagagtttgacgaagttaccagctctttttcgatgatcggatatttgaacgtc aaatggattgaccacagattacaatggatatcatcaaattacgaaggactgacgaaaatggtacttttacagagtgacgt atgggtaccgccaatactgttagtgaatccgtcacattcattcgacctgcttggattttctacagacagggtccaagtga tgcaggacggaagtgtcaattggcttccgccagatctattccaatttatatgcgaagcggacgtgacgcattttcctttt gatgaacaaacgtgcgcaatggctttacgcgcatgcggttatacgatttccgacttgaatatgcagcacgccagcgatag ggtatcggaagcatcgaccctcacggagaatggaatatgggagataatcgaaacgtcttcaagttcctatgttgatatgg atgcacaggttatgagattttctatcattatccgcaggagacccggattttacatcgtgaatctcgtcctcccgattatg gctatgttagttctacagcttttcgtttttctccttcctgttgagtctggagagcgcatcggatactctatcacaatact tttggctatttctgtcttcttttctattattaccgattttatccccgaaaccgtgattccaaacctaccgatcatttgtt acaaactgatcgtagacttcttcctttgtactttgataacgattctcgcaattatgagcctacggtgccataannnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnncgaggaagaaagcaagaaaataccgctagttctggttttgctgaccaagaagcttag |
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Protein
| Protein ID | pfu_aug2.0_252.1_07237.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_252.1_07237.t1 MYSNLFVTAFIISLFCFCEGTNFSTVEKLRSDLLTGYEPSLRPGTDQSIPLNISVGLSMTLLREFDEVTSSFSMIGYLNV KWIDHRLQWISSNYEGLTKMVLLQSDVWVPPILLVNPSHSFDLLGFSTDRVQVMQDGSVNWLPPDLFQFICEADVTHFPF DEQTCAMALRACGYTISDLNMQHASDRVSEASTLTENGIWEIIETSSSSYVDMDAQVMRFSIIIRRRPGFYIVNLVLPIM AMLVLQLFVFLLPVESGERIGYSITILLAISVFFSIITDFIPETVIPNLPIICYKLIVDFFLCTLITILAIMSLRCHXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGRKQENTASSGFADQEA |
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