Gene
| Gene Model ID | pfu_aug2.0_25.1_16724 |
|---|---|
| Locus | scaffold25.1 : 51261 ... 169045 : - |
| To GenomeBrowser | scaffold25.1:51261..169045 |
| Genes list of scaffold | scaffold25.1 |
| Synonym | pfu_aug1.0_42.1_07324 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_25.1_16724.t1 | 3 | 1 | PKD_channel | 310 | 343 | 1.1e-20 | 73.4 | 0.17 | 1300.0 | -2.5 |
| pfu_aug2.0_25.1_16724.t1 | 3 | 2 | PKD_channel | 773 | 834 | 1.1e-20 | 73.4 | 2.0e-05 | 0.15 | 10.4 |
| pfu_aug2.0_25.1_16724.t1 | 3 | 3 | PKD_channel | 855 | 1000 | 1.1e-20 | 73.4 | 9.7e-22 | 7.2e-18 | 64.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_25.1_16724.t1 | gi|291235031|ref|XP_002737449.1| | PREDICTED: polycystic kidney disease protein 1-like 2-like [Saccoglossus kowalevskii] | 4.0e-27 |
Transcript
| Transcript ID | pfu_aug2.0_25.1_16724.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_25.1_16724.t1 atgaatgtgaatgatacatcaactgtaaagtgcacggactcaataaattataacggagaacttggtgctcagacactgga ctgtctagaggaaactaaggatggcttgatgaagattgaaagtgtagggggccttattgacgatttcatggacgtcggta taattcaggactttttccgtgtaccacctcagtcaattaatgttgcatgccagacactaaggaacacaagtcaccttata tctgttatttaccattcggaggtccccgatggaagtcaataccattggttcaacctgggactcgtctcaacagaagtcaa aattctccaagaaaacttctgtccaatcttaaatgatattgatgtactcattaatccaaatgatattataaataataaga cagaccgtgataacacaacgtaccgttactctggcgacggcagttatggtcttgtcattgtcagcttttgtgttcctgaa aatgatgtatgcagcgcaagcatagaaaatgatgacatagactatgtgatagacattgatacattcgtcaacacgattac ccttttaaactcttcaactacgtcagtatcaatttataacggaagagcatacgtgttctacgatggtttacttcaggcag ttacgttagagatgtcatgtatccacaattccacaattttcaaggatgaatcttgctcagataattatggacttgtcaca acaactccagagtctaaagtattaaataaaagtgacggaggatggaatctcaatgccaaagaaaaggttcttggaatagt aaatgggaagataatgtttcggagtagattctttaacaccgatggatttaacctgtttattatactgccaaatccaataa acttcgatgcaattttctcaaaatttggggacaagttattagattcctacgttgtgttagctgttctgttatctttgata ctacttcttacattcggcaccctgcttacaaggcattatgatagaatagacgctctcagaaatcaatatcactgtgtgcg tgatgtagatggcgctgatactgttgcctactacataggaatccagacaggaatgacgtcaccaacaaactttatcttcc ctttgtttatgcaaatacaaggattttatggagaaactgaagttaaagctgttaactattgttgtgacattgtagtcaat cttcaacgatggagaacagcatatatgatatttacgacgaaaaatcatcttggtccaatacaaaatctgaaaatttgggt ggacgacccggatgccacacttgcaataaacaaaataataatccaggagtacggagataacggttgctcgtacgtttttc tgacggacagcaatgttgatggaagaaatttaactggaactcgatacaagtgcctgaggccctcaaatgtcatatttaga gaggaacatgtgcttttcagtcaagtcacgaaagttcgcttcttcgacgatattcttctactttcagttttctttctgcc aaaatatgaccactttacaagaaccagaaggttgtataccttagtaacatccttacttctttcaatgcttgctagtgcta tgtggtataattctgtgaaaaacattcctgtatacggaataacaatcgggccaatctctataaactaccagcagattctg acagggattgtaagtgcacttatcgtcgttccgccgatagcactgattacatattgttttcaaagatgcaggcaaagtag agcagatgcgcctcaactccgtaaacaccgatcatcaggaggaaataaatattccattttgattgtctttaactggctat tggttatatgtgttatgatgtgcagtatattcttcatcttcctgtacagccttcagtggggcggagctttatcaaaccaa tggctgctctcaattttatttggatttttgagtgattgcttcttcggtccactaaaggtactgtttatgtctgcaatttt tgctcatttcttaaaagcaaaggcttacgaagatgtcatgaagcttccagagttggaaataaatcatcaaagacaatatt cctttacaggaagtggaccgaaaagtacatggaacaacattgatgcatttgaacttgacgggagtggacgatcacgtgag ctagatagaaaacttcagatatttttacgaaatatctttggaagcattgggttcattcttctcatatggcttttgacacc acaaggtcgaactcagctatcctatcaacagaacactcacttgatgaattctttagatcctggatcagagataaacactg cagacgttttacagtggatatcttcaacgtttgttccttttctgaacggttctagtggatattttggctataaaaatgat gataatgttgcgtctgacggtactacatttcctatcggtcaggttagaatacgtcaacagagacgccaagatgttaacag ctgtcttaaactggatcaatacaagctattttctcctgtatgtacgaatgaagtcattagtaaagagaaaagaaaatttt gcgaagacaaatttatttccttcgatgacctatctttgatggacgatatataccgaatctgtctgggactgttgatattt atccacattctgggcttgttgaagcacctctccttcaattatcatctctacctgatgcattcatcaataacgggctcgat aagcagtttaatgagcagtatggctttgatcgggatagggatctttgcgtttgcctctttggaatatctcattagtggaa gaaacatttttgcgtacaaatcactagagagcgccttcttctcccttgtcacatctactgtgtccttggcaaagctcagt ttgaacagttctgccgatgaagaccaaatgaacaacgttgttttcatcttattttgtttaatcatcaactatatcttaat caatttactagtcagtatcctgaatgaggcaataacgactatcaaaggaaaaagactaacatcagatgaaaattatgacg cagaactgaatgaacacttaatggcgagattaaagagacttttaaacttctgtggttttggagagcaaaaggaagatgca aagaaaacatacagtacattaagatgtcacagtgaggagataacgaaggtggataatttctgcaagtttgtgactgacca gtacgtaacaggaccggccacatcgactttgtga |
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Protein
| Protein ID | pfu_aug2.0_25.1_16724.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_25.1_16724.t1 MNVNDTSTVKCTDSINYNGELGAQTLDCLEETKDGLMKIESVGGLIDDFMDVGIIQDFFRVPPQSINVACQTLRNTSHLI SVIYHSEVPDGSQYHWFNLGLVSTEVKILQENFCPILNDIDVLINPNDIINNKTDRDNTTYRYSGDGSYGLVIVSFCVPE NDVCSASIENDDIDYVIDIDTFVNTITLLNSSTTSVSIYNGRAYVFYDGLLQAVTLEMSCIHNSTIFKDESCSDNYGLVT TTPESKVLNKSDGGWNLNAKEKVLGIVNGKIMFRSRFFNTDGFNLFIILPNPINFDAIFSKFGDKLLDSYVVLAVLLSLI LLLTFGTLLTRHYDRIDALRNQYHCVRDVDGADTVAYYIGIQTGMTSPTNFIFPLFMQIQGFYGETEVKAVNYCCDIVVN LQRWRTAYMIFTTKNHLGPIQNLKIWVDDPDATLAINKIIIQEYGDNGCSYVFLTDSNVDGRNLTGTRYKCLRPSNVIFR EEHVLFSQVTKVRFFDDILLLSVFFLPKYDHFTRTRRLYTLVTSLLLSMLASAMWYNSVKNIPVYGITIGPISINYQQIL TGIVSALIVVPPIALITYCFQRCRQSRADAPQLRKHRSSGGNKYSILIVFNWLLVICVMMCSIFFIFLYSLQWGGALSNQ WLLSILFGFLSDCFFGPLKVLFMSAIFAHFLKAKAYEDVMKLPELEINHQRQYSFTGSGPKSTWNNIDAFELDGSGRSRE LDRKLQIFLRNIFGSIGFILLIWLLTPQGRTQLSYQQNTHLMNSLDPGSEINTADVLQWISSTFVPFLNGSSGYFGYKND DNVASDGTTFPIGQVRIRQQRRQDVNSCLKLDQYKLFSPVCTNEVISKEKRKFCEDKFISFDDLSLMDDIYRICLGLLIF IHILGLLKHLSFNYHLYLMHSSITGSISSLMSSMALIGIGIFAFASLEYLISGRNIFAYKSLESAFFSLVTSTVSLAKLS LNSSADEDQMNNVVFILFCLIINYILINLLVSILNEAITTIKGKRLTSDENYDAELNEHLMARLKRLLNFCGFGEQKEDA KKTYSTLRCHSEEITKVDNFCKFVTDQYVTGPATSTL |
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