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OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug2.0_2481.1_05553
Locus scaffold2481.1 : 67215 ... 87155 : -
To GenomeBrowser scaffold2481.1:67215..87155
Genes list of scaffold scaffold2481.1
Synonym pfu_aug1.0_1334.1_36961

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug2.0_2481.1_05553.t1 2 1 Lectin_C 55 170 4.1e-15 56.2 6.5e-09 4.8e-05 23.9
pfu_aug2.0_2481.1_05553.t1 4 1 Herpes_UL45 136 170 2.0e-06 27.3 2.2e-05 0.16 11.3
pfu_aug2.0_2481.1_05553.t1 4 2 Herpes_UL45 172 304 2.0e-06 27.3 9.1e-09 6.8e-05 22.3
pfu_aug2.0_2481.1_05553.t1 2 2 Lectin_C 205 303 4.1e-15 56.2 8.7e-12 6.5e-08 33.1
pfu_aug2.0_2481.1_05553.t1 4 3 Herpes_UL45 331 375 2.0e-06 27.3 0.19 1400.0 -1.6
pfu_aug2.0_2481.1_05553.t1 4 4 Herpes_UL45 386 406 2.0e-06 27.3 0.087 650.0 -0.4

Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug2.0_2481.1_05553.t1 gi|573893314|ref|XP_006634410.1| PREDICTED: macrophage mannose receptor 1-like [Lepisosteus oculatus] 1.0e-08
pfu_aug2.0_2481.1_05553.t1 gi|529418049|ref|XP_005228905.1| PREDICTED: macrophage mannose receptor 1-like [Falco peregrinus] 2.0e-08
pfu_aug2.0_2481.1_05553.t1 gi|663257545|ref|XP_008490915.1| PREDICTED: macrophage mannose receptor 1-like [Calypte anna] 2.0e-08
pfu_aug2.0_2481.1_05553.t1 gi|260798008|ref|XP_002593992.1| hypothetical protein BRAFLDRAFT_68569 [Branchiostoma floridae] 4.0e-08

Transcript
Transcript IDpfu_aug2.0_2481.1_05553.t1
Definition-
>pfu_aug2.0_2481.1_05553.t1
atggaactcaccacagcggacgacattcttctcagattaaaccaaaaggaactcgtaaaaaaacttctccgcgagcagtt
tgagaaatggataatggcctcctgtccatttaattcaatatttgacccaaatcgacatctatgttattggccatcaagtc
tgaaacaaagtttccaggcgcatgaagtatactgtgaaatagacaatggaattgtcatcacaatagacagcagtcagacg
gaaacttttataaatgagaccataccatgggatcaatggttcgctggccaaacaaactatgatatattcattggacgaat
agatgtgttcaagaataaacagttttaccagttggaatcaatacctttggtaagtgaggccatacctttggatcacacaa
tgttctccagcattgcatcgaatcaagattccctggactgctgtatactatatggatcaggggctccaagaatggatgac
tgcagcaacacgcagcaggccatatgtagcattggtgcaatctcacaaagcgactgtccaactcaagggaaattgtttga
ctatagatgttattggcctttaacgacaccgaattccgcagaaaatcaactagtatcttgtagtaacgacttcggaacct
tagcaatttttcataactcaagcaccatagatcaagtagttgccgagttctcaaattggggattatctacaccttggatt
ggtataaacgacttggacactgaagggatttacaaagaaagtttcgaaattaagtacactacatttgagccttgggcaac
aaccgagcctggtacagacactgaagagcgttgtgtggaacgatggagtaaagatggattttggaatgatttgaggtgta
cagaatcacgattgtcgatttgtcaaaagccaggtaagttttatgtaggaacaatgccagaaaccacaactgaattaatt
accctatccactggttcagggagcagtacctgtaagtgtacctgtaagacgaacataacgatttcagatgaggaactcac
caaaaaattagaagaaataagaaatgtgctttttattccaaaaaatagcacaaaagcttttctacgaacgaaaacgagca
cttacgaagatcgaccagtggcgaagggtcttggtagtattggcattgccataattgtaattgttgtaacattaattgtg
tgtatagacgtttcttcccttattgctaaaagaggaagctga

Protein
Protein IDpfu_aug2.0_2481.1_05553.t1
Definition-
>pfu_aug2.0_2481.1_05553.t1
MELTTADDILLRLNQKELVKKLLREQFEKWIMASCPFNSIFDPNRHLCYWPSSLKQSFQAHEVYCEIDNGIVITIDSSQT
ETFINETIPWDQWFAGQTNYDIFIGRIDVFKNKQFYQLESIPLVSEAIPLDHTMFSSIASNQDSLDCCILYGSGAPRMDD
CSNTQQAICSIGAISQSDCPTQGKLFDYRCYWPLTTPNSAENQLVSCSNDFGTLAIFHNSSTIDQVVAEFSNWGLSTPWI
GINDLDTEGIYKESFEIKYTTFEPWATTEPGTDTEERCVERWSKDGFWNDLRCTESRLSICQKPGKFYVGTMPETTTELI
TLSTGSGSSTCKCTCKTNITISDEELTKKLEEIRNVLFIPKNSTKAFLRTKTSTYEDRPVAKGLGSIGIAIIVIVVTLIV
CIDVSSLIAKRGS

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