Gene
Gene Model ID | pfu_aug2.0_2481.1_05553 |
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Locus | scaffold2481.1 : 67215 ... 87155 : - |
To GenomeBrowser | scaffold2481.1:67215..87155 |
Genes list of scaffold | scaffold2481.1 |
Synonym | pfu_aug1.0_1334.1_36961 |
Manual annotation
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug2.0_2481.1_05553.t1 | 2 | 1 | Lectin_C | 55 | 170 | 4.1e-15 | 56.2 | 6.5e-09 | 4.8e-05 | 23.9 |
pfu_aug2.0_2481.1_05553.t1 | 4 | 1 | Herpes_UL45 | 136 | 170 | 2.0e-06 | 27.3 | 2.2e-05 | 0.16 | 11.3 |
pfu_aug2.0_2481.1_05553.t1 | 4 | 2 | Herpes_UL45 | 172 | 304 | 2.0e-06 | 27.3 | 9.1e-09 | 6.8e-05 | 22.3 |
pfu_aug2.0_2481.1_05553.t1 | 2 | 2 | Lectin_C | 205 | 303 | 4.1e-15 | 56.2 | 8.7e-12 | 6.5e-08 | 33.1 |
pfu_aug2.0_2481.1_05553.t1 | 4 | 3 | Herpes_UL45 | 331 | 375 | 2.0e-06 | 27.3 | 0.19 | 1400.0 | -1.6 |
pfu_aug2.0_2481.1_05553.t1 | 4 | 4 | Herpes_UL45 | 386 | 406 | 2.0e-06 | 27.3 | 0.087 | 650.0 | -0.4 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug2.0_2481.1_05553.t1 | gi|573893314|ref|XP_006634410.1| | PREDICTED: macrophage mannose receptor 1-like [Lepisosteus oculatus] | 1.0e-08 |
pfu_aug2.0_2481.1_05553.t1 | gi|529418049|ref|XP_005228905.1| | PREDICTED: macrophage mannose receptor 1-like [Falco peregrinus] | 2.0e-08 |
pfu_aug2.0_2481.1_05553.t1 | gi|663257545|ref|XP_008490915.1| | PREDICTED: macrophage mannose receptor 1-like [Calypte anna] | 2.0e-08 |
pfu_aug2.0_2481.1_05553.t1 | gi|260798008|ref|XP_002593992.1| | hypothetical protein BRAFLDRAFT_68569 [Branchiostoma floridae] | 4.0e-08 |
Transcript
Transcript ID | pfu_aug2.0_2481.1_05553.t1 |
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Definition | - |
>pfu_aug2.0_2481.1_05553.t1 atggaactcaccacagcggacgacattcttctcagattaaaccaaaaggaactcgtaaaaaaacttctccgcgagcagtt tgagaaatggataatggcctcctgtccatttaattcaatatttgacccaaatcgacatctatgttattggccatcaagtc tgaaacaaagtttccaggcgcatgaagtatactgtgaaatagacaatggaattgtcatcacaatagacagcagtcagacg gaaacttttataaatgagaccataccatgggatcaatggttcgctggccaaacaaactatgatatattcattggacgaat agatgtgttcaagaataaacagttttaccagttggaatcaatacctttggtaagtgaggccatacctttggatcacacaa tgttctccagcattgcatcgaatcaagattccctggactgctgtatactatatggatcaggggctccaagaatggatgac tgcagcaacacgcagcaggccatatgtagcattggtgcaatctcacaaagcgactgtccaactcaagggaaattgtttga ctatagatgttattggcctttaacgacaccgaattccgcagaaaatcaactagtatcttgtagtaacgacttcggaacct tagcaatttttcataactcaagcaccatagatcaagtagttgccgagttctcaaattggggattatctacaccttggatt ggtataaacgacttggacactgaagggatttacaaagaaagtttcgaaattaagtacactacatttgagccttgggcaac aaccgagcctggtacagacactgaagagcgttgtgtggaacgatggagtaaagatggattttggaatgatttgaggtgta cagaatcacgattgtcgatttgtcaaaagccaggtaagttttatgtaggaacaatgccagaaaccacaactgaattaatt accctatccactggttcagggagcagtacctgtaagtgtacctgtaagacgaacataacgatttcagatgaggaactcac caaaaaattagaagaaataagaaatgtgctttttattccaaaaaatagcacaaaagcttttctacgaacgaaaacgagca cttacgaagatcgaccagtggcgaagggtcttggtagtattggcattgccataattgtaattgttgtaacattaattgtg tgtatagacgtttcttcccttattgctaaaagaggaagctga |
Protein
Protein ID | pfu_aug2.0_2481.1_05553.t1 |
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Definition | - |
>pfu_aug2.0_2481.1_05553.t1 MELTTADDILLRLNQKELVKKLLREQFEKWIMASCPFNSIFDPNRHLCYWPSSLKQSFQAHEVYCEIDNGIVITIDSSQT ETFINETIPWDQWFAGQTNYDIFIGRIDVFKNKQFYQLESIPLVSEAIPLDHTMFSSIASNQDSLDCCILYGSGAPRMDD CSNTQQAICSIGAISQSDCPTQGKLFDYRCYWPLTTPNSAENQLVSCSNDFGTLAIFHNSSTIDQVVAEFSNWGLSTPWI GINDLDTEGIYKESFEIKYTTFEPWATTEPGTDTEERCVERWSKDGFWNDLRCTESRLSICQKPGKFYVGTMPETTTELI TLSTGSGSSTCKCTCKTNITISDEELTKKLEEIRNVLFIPKNSTKAFLRTKTSTYEDRPVAKGLGSIGIAIIVIVVTLIV CIDVSSLIAKRGS |