Gene
| Gene Model ID | pfu_aug2.0_2462.1_08877 |
|---|---|
| Locus | scaffold2462.1 : 53543 ... 62495 : - |
| To GenomeBrowser | scaffold2462.1:53543..62495 |
| Genes list of scaffold | scaffold2462.1 |
| Synonym | pfu_aug1.0_2131.1_37224 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| transcription intermediary factor 1-alpha isoform 1 | GO:0005488 GO:0043170 GO:0044238 GO:0050794 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_2462.1_08877.t1 | 3 | 1 | zf-B_box | 261 | 307 | 4.9e-13 | 48.7 | 5.6e-06 | 0.041 | 13.7 |
| pfu_aug2.0_2462.1_08877.t1 | 3 | 2 | zf-B_box | 318 | 367 | 4.9e-13 | 48.7 | 6.0e-10 | 4.5e-06 | 26.4 |
| pfu_aug2.0_2462.1_08877.t1 | 3 | 3 | zf-B_box | 379 | 427 | 4.9e-13 | 48.7 | 4.5e-08 | 0.00034 | 20.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_2462.1_08877.t1 | gi|395837426|ref|XP_003791635.1| | PREDICTED: transcription intermediary factor 1-alpha isoform X2 [Otolemur garnettii] | 9.0e-07 |
| pfu_aug2.0_2462.1_08877.t1 | gi|194380288|dbj|BAG63911.1| | unnamed protein product [Homo sapiens] | 1.0e-06 |
| pfu_aug2.0_2462.1_08877.t1 | gi|585177442|ref|XP_006740455.1| | PREDICTED: transcription intermediary factor 1-alpha isoform X3 [Leptonychotes weddellii] | 1.0e-06 |
| pfu_aug2.0_2462.1_08877.t1 | gi|472394997|ref|XP_004416744.1| | PREDICTED: transcription intermediary factor 1-alpha isoform X3 [Odobenus rosmarus divergens] | 1.0e-06 |
| pfu_aug2.0_2462.1_08877.t1 | gi|296210521|ref|XP_002807106.1| | PREDICTED: LOW QUALITY PROTEIN: transcription intermediary factor 1-alpha [Callithrix jacchus] | 1.0e-06 |
Transcript
| Transcript ID | pfu_aug2.0_2462.1_08877.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2462.1_08877.t1 atggctgaaaaagacgaaaataagatagaaagtgggcaggacatgtcctcaaagaataccgaaaacaaagaaacagagcc tttgggctgccatccagtcgctgtcgaacaaaatacaatcatgacagaaattgggaaattcgcatgttctgaagaaattg aaacagtgattgctgatggagagataatcaagatggaaactgtggaaaactcgatttctcggagtgcgacatcaatgagt caagtactcgattcctacagagtcgccgacatcaatgtagtacaagttcagctagtaaaagactacgattcctcggagtg ccagtacataaatgagtcacgttcagctgtaaaagactcgattcctcagagcgccgacatcaatgagtcaagttcagctg taaaagactcgattcctcagagtgcagacatgaatgagtcaagttcagctgtaaaagactcgattcctcagagtaccgac atcaatgagtcaagttcagctgtacaagactcgatttcccaaagtgccaacatctatgagtcaagttcagctgtaaaaga gtcgatttctcagagtgccaacatcaacgagtcaagttcagctgtaaaagactcaatttcccagagtgccgacatcagtg agtcaagttctctgagtgctgatataaattacacagttcgagcaaaaatggatgttcatttagatacggacaagacctat aaagagcatttgagtgatatgacaaaagaagtctgcgttgggggtaaagaggtcgcttgtcgattctgtcaagtttgcac tgaattagggctgaaagaaatagcatctcagttttgtaaggaatgcgactactttttgtgcaaagtatgttcaaagcggc atagtgtgcaaaaagtaagtaaaaatcacacggtcatttctactgaagagtttgacgccatcaaaagagagcagaaggtg aaatgcgacacctgtaaggctctgggaagcgatgccgatgctacatcattttgcaatgattgcgaggaatatctatgcat tgaatgtacacgccatcaccaagctatgaaactgaccaaggaccacaaattggtatctgtagaggagaaatgtgacggtt tgtatggagaggaagcatttaattgtgagccttgtgaaagtctcgaagaaaccatacaggcaactgcatactgcaaggac tgcaatgaacatctttgtgatggttgccaaaaaagacacaaggcaatgaaattgacaaaaactcatacagtggtaacgat agaacagtttctaaagatgaaaatgtctgggaatgctgttttaaacgatctttgcaaggagaaggggtga |
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Protein
| Protein ID | pfu_aug2.0_2462.1_08877.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2462.1_08877.t1 MAEKDENKIESGQDMSSKNTENKETEPLGCHPVAVEQNTIMTEIGKFACSEEIETVIADGEIIKMETVENSISRSATSMS QVLDSYRVADINVVQVQLVKDYDSSECQYINESRSAVKDSIPQSADINESSSAVKDSIPQSADMNESSSAVKDSIPQSTD INESSSAVQDSISQSANIYESSSAVKESISQSANINESSSAVKDSISQSADISESSSLSADINYTVRAKMDVHLDTDKTY KEHLSDMTKEVCVGGKEVACRFCQVCTELGLKEIASQFCKECDYFLCKVCSKRHSVQKVSKNHTVISTEEFDAIKREQKV KCDTCKALGSDADATSFCNDCEEYLCIECTRHHQAMKLTKDHKLVSVEEKCDGLYGEEAFNCEPCESLEETIQATAYCKD CNEHLCDGCQKRHKAMKLTKTHTVVTIEQFLKMKMSGNAVLNDLCKEKG |
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