Gene
| Gene Model ID | pfu_aug2.0_244.1_13868 |
|---|---|
| Locus | scaffold244.1 : 314758 ... 331523 : - |
| To GenomeBrowser | scaffold244.1:314758..331523 |
| Genes list of scaffold | scaffold244.1 |
| Synonym | pfu_aug1.0_41746.1_05192 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_244.1_13868.t1 | 2 | 1 | DDE_Tnp_1 | 136 | 269 | 2.5e-06 | 27.2 | 3.3e-06 | 0.0054 | 16.2 |
| pfu_aug2.0_244.1_13868.t1 | 2 | 1 | DDE_Tnp_4 | 138 | 272 | 3.30006e-42 | 143.7 | 7.9e-34 | 1.3e-30 | 106.0 |
| pfu_aug2.0_244.1_13868.t1 | 3 | 1 | EVE | 192 | 213 | 0.0 | 160.8 | 1.2 | 2000.0 | -1.3 |
| pfu_aug2.0_244.1_13868.t1 | 2 | 2 | DDE_Tnp_4 | 311 | 377 | 3.30006e-42 | 143.7 | 5.2e-12 | 8.5e-09 | 35.1 |
| pfu_aug2.0_244.1_13868.t1 | 2 | 2 | DDE_Tnp_1 | 311 | 402 | 2.5e-06 | 27.2 | 0.00094 | 1.5 | 8.2 |
| pfu_aug2.0_244.1_13868.t1 | 3 | 2 | EVE | 318 | 338 | 0.0 | 160.8 | 1.6 | 2600.0 | -1.7 |
| pfu_aug2.0_244.1_13868.t1 | 3 | 3 | EVE | 473 | 633 | 0.0 | 160.8 | 0.0 | 0.0 | 157.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_244.1_13868.t1 | gi|260835998|ref|XP_002612994.1| | hypothetical protein BRAFLDRAFT_120829 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_244.1_13868.t1 | gi|657567266|ref|XP_008287010.1| | PREDICTED: thymocyte nuclear protein 1 [Stegastes partitus] | 0.0 |
| pfu_aug2.0_244.1_13868.t1 | gi|156392004|ref|XP_001635839.1| | predicted protein [Nematostella vectensis] | 0.0 |
| pfu_aug2.0_244.1_13868.t1 | gi|641799678|ref|XP_008162789.1| | PREDICTED: thymocyte nuclear protein 1 isoform X3 [Chrysemys picta bellii] | 0.0 |
| pfu_aug2.0_244.1_13868.t1 | gi|591385171|ref|XP_007067034.1| | PREDICTED: thymocyte nuclear protein 1 [Chelonia mydas] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_244.1_13868.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_244.1_13868.t1 atgatgcacaagagtctgaagaagctgtccgtgaaactggcagagggagatgggccagttcctgctgtgaccatgacaga agccttggatcacagctatcacagatcatgtgaatccctggttcaagagataatgaaattggaacaacatgtaaaaagtt tggagcaggaaattgaggaactcaaaacaaagaaacccccatttactattgaccaaattatcgactgtgaaaagaagatg ctgatgtacacaacactcaaggcagacatgttcaacataattgatgccacattacaaagattccctttgaattatgttga tgggatgatcgataacaagatgccctctttgctcaagtgcaagtcatcaatgccagccagctttggggacttcagctgtt gtcgcctagtcattgatgccacagaagtaacacaagatgtgccagggcaggacatgaatgcgcagtcacacacgtatagc tcttacaagaaccgccatacggtgaagtcagttactggagttgccccaaatggagcagttgtttatgttagcaaagtgta ccctggtagtacatcagatgttgcaattgttgatcacagcaatatgcttgatcagctgtcaccaggagatatgatactgg ctgacaagggatttactatcaattcattgcttccatcaggtgttcatctaaacattccacccttcttaaaggacaaaggt caatacacaccagcagaggtacagatgtgcagaaagattgctagatcacgaattcatattgaaagagtgaacgagaggat aaaatacatgtattttgtaaaaagaagggaggaaatctccaacaagactcctttgcagcatcaannnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtgtaccctggtagtacatcagatgttgca attgttgatcacagcaatatgcttgatcagctgtcaccaggagatatgatactggctgacaagggatttactatcaattc attgcttccatcaggtgttcatctaaacattccacccttcttaaaggacaaaggtcaatacacaccagcagagaagggag gaaatctccaacaagactcctttgcagcatcaacagtaaaacaccaaaacacccgatgcaaaaacacaaaagacgagtac agcacgagacggaaaagagacacacgacatgtaaacatcaaacacaaaagactacacataaaccgacgagaccaatgggt aaccggtgccgactttggacggccatttgtcacgcaagtagcaaatgcatttggtgcttccaattcaaccaaagtaaagg agaatagtgcttcgagtaagggagctggtaacaacaatgcatctgtaacatatacacactggctgatgaagtcagaacct gagagtcgatttgagaatggaattgatgtgaagtttggaattgaggatttgaaggactgtgaggaccaaacagcatgttg ggatggagtgagaaattatcaggctaggaatttcatgcgagaccaaatggagataggtcagaaagcttacttttaccata gtaattgtaaggaaccagggatagctggaatatgtaagatagtaaaagagagctatcctgatcacacccagtttgataag aaagatccacattatgattcgaaggcaaagaaagacaaccctacttggtatatggtggatgtcaaatttgttagaatgat gaagaggtttatccccctttctgaattaaagaagcttcacctggagcacaaacagcatggagggccgttaaaagatgtag ctctgtttaccagagctagactgtctgtacagcctctcactgaggttgacatagatgaagtgaattttgttctgtttcta acaataacctttttctggtaa |
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Protein
| Protein ID | pfu_aug2.0_244.1_13868.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_244.1_13868.t1 MMHKSLKKLSVKLAEGDGPVPAVTMTEALDHSYHRSCESLVQEIMKLEQHVKSLEQEIEELKTKKPPFTIDQIIDCEKKM LMYTTLKADMFNIIDATLQRFPLNYVDGMIDNKMPSLLKCKSSMPASFGDFSCCRLVIDATEVTQDVPGQDMNAQSHTYS SYKNRHTVKSVTGVAPNGAVVYVSKVYPGSTSDVAIVDHSNMLDQLSPGDMILADKGFTINSLLPSGVHLNIPPFLKDKG QYTPAEVQMCRKIARSRIHIERVNERIKYMYFVKRREEISNKTPLQHQXXXXXXXXXXXXXXXXXXXXXXVYPGSTSDVA IVDHSNMLDQLSPGDMILADKGFTINSLLPSGVHLNIPPFLKDKGQYTPAEKGGNLQQDSFAASTVKHQNTRCKNTKDEY STRRKRDTRHVNIKHKRLHINRRDQWVTGADFGRPFVTQVANAFGASNSTKVKENSASSKGAGNNNASVTYTHWLMKSEP ESRFENGIDVKFGIEDLKDCEDQTACWDGVRNYQARNFMRDQMEIGQKAYFYHSNCKEPGIAGICKIVKESYPDHTQFDK KDPHYDSKAKKDNPTWYMVDVKFVRMMKRFIPLSELKKLHLEHKQHGGPLKDVALFTRARLSVQPLTEVDIDEVNFVLFL TITFFW |
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