Gene
| Gene Model ID | pfu_aug2.0_2430.1_02128 |
|---|---|
| Locus | scaffold2430.1 : 62336 ... 78136 : + |
| To GenomeBrowser | scaffold2430.1:62336..78136 |
| Genes list of scaffold | scaffold2430.1 |
| Synonym | pfu_aug1.0_1421.1_15484 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| rna-binding protein 38 | GO:0003729 GO:0010830 GO:0043488 GO:0044424 GO:0048523 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_2430.1_02128.t1 | 1 | 1 | RRM_1 | 15 | 72 | 4.1e-20 | 71.1 | 1.7e-23 | 6.3e-20 | 70.5 |
| pfu_aug2.0_2430.1_02128.t1 | 1 | 1 | RRM_6 | 15 | 82 | 1.4e-17 | 63.4 | 7.3e-21 | 2.7e-17 | 62.4 |
| pfu_aug2.0_2430.1_02128.t1 | 1 | 1 | RRM_5 | 29 | 88 | 2.2e-07 | 30.6 | 9.4e-11 | 3.5e-07 | 29.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_2430.1_02128.t1 | gi|585676254|ref|XP_006818923.1| | PREDICTED: RNA-binding protein 24-like [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_2430.1_02128.t1 | gi|555951688|ref|XP_005888039.1| | PREDICTED: RNA-binding protein 38 [Bos mutus] | 0.0 |
| pfu_aug2.0_2430.1_02128.t1 | gi|329664824|ref|NP_001192952.1| | RNA-binding protein 38 [Bos taurus] | 0.0 |
| pfu_aug2.0_2430.1_02128.t1 | gi|594049384|ref|XP_006049074.1| | PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 38 [Bubalus bubalis] | 0.0 |
| pfu_aug2.0_2430.1_02128.t1 | gi|147906083|ref|NP_001079578.1| | RNA-binding protein 24-B [Xenopus laevis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_2430.1_02128.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2430.1_02128.t1 atggctaacaccattacacagaaggacactacctttaccaaaattttcgttggaggtttaccttatcacacaacggacaa atcattacgtgaattctttgataagtttggtgacatcgaggaagctgtagtaataacagacagacagacgggcaaaagcc ggggctatggattcgtcacgatggcaaaccgcgaggctgccgaacgggcatgtaaggatccaaacccgatcattgacggc aggaaagctaacgtaaatctagcgtatctgggagccaaaccaagagggatccccctggcagtgaagggtgtgcctggaat cctccccggtcagtttggatatccacagtacatttttccatctacggcatacgttgcagcgccctctaccgctagtttac taacggcagcatcggcagtcccgcaatcaccgctttctccaaccaccggcggacatctgatagactacactactgcttat gcgtcacaatttgctgctgccaacgctgggacatatgaagcggcaacatacccgtacgcatcaacaacaaacggattcgt gacgccagccggaactgcttacacatacgccgcagtaccgcagccagcaatcgtagcgggcggaagtacgatacattacc aacctcaacagttacaagagaggatgcaataa |
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Protein
| Protein ID | pfu_aug2.0_2430.1_02128.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2430.1_02128.t1 MANTITQKDTTFTKIFVGGLPYHTTDKSLREFFDKFGDIEEAVVITDRQTGKSRGYGFVTMANREAAERACKDPNPIIDG RKANVNLAYLGAKPRGIPLAVKGVPGILPGQFGYPQYIFPSTAYVAAPSTASLLTAASAVPQSPLSPTTGGHLIDYTTAY ASQFAAANAGTYEAATYPYASTTNGFVTPAGTAYTYAAVPQPAIVAGGSTIHYQPQQLQERMQ |
|