Gene
| Gene Model ID | pfu_aug2.0_2425.1_18813 |
|---|---|
| Locus | scaffold2425.1 : 76191 ... 98164 : - |
| To GenomeBrowser | scaffold2425.1:76191..98164 |
| Genes list of scaffold | scaffold2425.1 |
| Synonym | pfu_aug1.0_17.1_14692 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| dna polymerase subunit gamma-1 isoform x1 | GO:0004527 GO:0005515 GO:0005743 GO:0005759 GO:0006264 GO:0007568 GO:0016779 GO:0090305 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_2425.1_18813.t1 | 1 | 1 | DNA_pol_A | 367 | 750 | 0.0 | 340.0 | 0.0 | 0.0 | 339.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_2425.1_18813.t1 | gi|674086462|ref|XP_008851053.1| | PREDICTED: DNA polymerase subunit gamma-1 isoform X3 [Nannospalax galili] | 0.0 |
| pfu_aug2.0_2425.1_18813.t1 | gi|611967886|ref|XP_007479414.1| | PREDICTED: DNA polymerase subunit gamma-1 isoform X1 [Monodelphis domestica] | 0.0 |
| pfu_aug2.0_2425.1_18813.t1 | gi|591371239|ref|XP_007060434.1| | PREDICTED: DNA polymerase subunit gamma-1, partial [Chelonia mydas] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_2425.1_18813.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2425.1_18813.t1 gcatctacagaatggcagacacagagctctctgaacaaccttaacgatgtttatcagttacactgtggtgggccaaaact agagaaggagaccagagagatatttgtagagggttctatgacagatgtcagggagcagttccaggaactgacagcttatt gtgcgtctgatgtagaagcaacacttaaggtcttcaagaagttatggccagagtttctcttaagatttcctcacccagta acactggcaggtatgtttgagatgagttctgcttatttacctatcaactgtaactggcagagatatattcaacagtccaa tgccatatatgaagatctacagaatgaacagaaaagggcgctgatgaaacttgccaatgaagcctgtgaatatttattca atgagaaatacaaggaggacctttggttgtgggatcttgattggtctgttaaagaattcagaatgaagaaaataagagac aatgggaatatangggaatacagtaagtctagttgtgatacaatacctttgaatatgaaatatacagaaacagatgaaga aatgttgaagcgaattcttgacaccaaacagtacatctttaaggttaaaactcataaagctggatatcctaagtggtatg ctgatttatgtcccaagctgcgtgctgaggactggaaccctggtccgtccctgatctctaccctgatgagagtgacgccc aagctgatgcgtgttacatataatggctatcccttacattatgatgagaaacatgcctggggatacctggtgccagacaa ggtcaaggccgcccaggacagggagaagatgatggaggacgatgatgatgaggatgaaaaacatgtcctgtctttcccaa taaaagctctgtttgagttttgtggagataaggtggatgaggagttgttgaggccaatgactgatgaggaatttgagaac atgatgaacaattcctccagcatggtagaggaaagcatggaatgggaggagaaacagcgccatctagaggcagcagctgt ccaatctaaagctagaaaggatcaagagataaggtttgatgttggaattcctggagcttggttctacaaaattccacata aggatggcaagggaagtaatgtaggtaatcctctagccaaagattacattctactgtttgaaaatggtacaatgaagaca ctgtcgggaacgaatgccagtaaagtactgaaactcagtaaaacctgctcctactggaaaatggccaaagacaggataca gtcacaaatggcagttgaattgcaagaaaatgaattaccagacttggttaaaaggcatgatgactttgaagaagacagtt tttacggagctatcattccacgtattgttccagccggcactgtcacacgtagagctgtggagaaaacctggctcacagcc agtaatgcttacgcagacagagttggtagtgagttgaaggccatgatccaagcccctccaggctgtgactttgtgggagc agacgttgactctcaggaactgtggattgcagctataattggtgactcgtttgccagaatgcacggctgtactccatttg gttggatgactttgcaagggaaaaaaagtgaaaagacagatctacacagtaaaacagctgagactgttgggataagtagg gaccatgcaaaggtactgaattacggtaggatatatggtgctggacagaagtttgctgagactttactaaagcagtttaa ccccaacttgacacctatagaggcaaataagaaggccagacttatgtacacaacaaccaaaggcaagaaattgaggagag acaagaaatgggttggtggaacggagagcgagaccttcaatcgtttagaggagatagctacccgagagcatcctaaaact cccgtcctgaactgctctatcagtaaatcactgcaaccagaaaatgttggagaagaatttatgacgagtcgtataaactg ggtggtgcagagttctgccgtagattacctacatttgatgttagtatgcatgcgatggctgtttgatgaatacgatatca atggtcggttctgtatcagtatccatgacgaggtgcgttacctggtaaccagcgaggacaaataccgtgcggcactagca ttacagatcaccaatcttctcactcgcagtctgtttgcttacaaacttggcatgaaaaatctaccacagtctgttgcctt ctttagtgctgttgacattgacaaatgtttgagaaaagaagttcacctggactgttccacaccaagtaatcgttatggga tggagaggggatatggtctgccaaaaggtgaggccttggacatatacaccatcatcgacaaaacaaacggatcgttatac aagacagatgacaagcaggaggctgtagtcactggttga |
|
Protein
| Protein ID | pfu_aug2.0_2425.1_18813.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2425.1_18813.t1 ASTEWQTQSSLNNLNDVYQLHCGGPKLEKETREIFVEGSMTDVREQFQELTAYCASDVEATLKVFKKLWPEFLLRFPHPV TLAGMFEMSSAYLPINCNWQRYIQQSNAIYEDLQNEQKRALMKLANEACEYLFNEKYKEDLWLWDLDWSVKEFRMKKIRD NGNIXEYSKSSCDTIPLNMKYTETDEEMLKRILDTKQYIFKVKTHKAGYPKWYADLCPKLRAEDWNPGPSLISTLMRVTP KLMRVTYNGYPLHYDEKHAWGYLVPDKVKAAQDREKMMEDDDDEDEKHVLSFPIKALFEFCGDKVDEELLRPMTDEEFEN MMNNSSSMVEESMEWEEKQRHLEAAAVQSKARKDQEIRFDVGIPGAWFYKIPHKDGKGSNVGNPLAKDYILLFENGTMKT LSGTNASKVLKLSKTCSYWKMAKDRIQSQMAVELQENELPDLVKRHDDFEEDSFYGAIIPRIVPAGTVTRRAVEKTWLTA SNAYADRVGSELKAMIQAPPGCDFVGADVDSQELWIAAIIGDSFARMHGCTPFGWMTLQGKKSEKTDLHSKTAETVGISR DHAKVLNYGRIYGAGQKFAETLLKQFNPNLTPIEANKKARLMYTTTKGKKLRRDKKWVGGTESETFNRLEEIATREHPKT PVLNCSISKSLQPENVGEEFMTSRINWVVQSSAVDYLHLMLVCMRWLFDEYDINGRFCISIHDEVRYLVTSEDKYRAALA LQITNLLTRSLFAYKLGMKNLPQSVAFFSAVDIDKCLRKEVHLDCSTPSNRYGMERGYGLPKGEALDIYTIIDKTNGSLY KTDDKQEAVVTG |
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