Gene
| Gene Model ID | pfu_aug2.0_241.1_03869 |
|---|---|
| Locus | scaffold241.1 : 378106 ... 400182 : + |
| To GenomeBrowser | scaffold241.1:378106..400182 |
| Genes list of scaffold | scaffold241.1 |
| Synonym | pfu_aug1.0_1929.1_00894 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| melanopsin-a-like isoform x2 | GO:0007165 GO:0016020 GO:0038023 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_241.1_03869.t1 | 1 | 1 | 7tm_1 | 2 | 180 | 6.9e-32 | 110.5 | 2.8e-35 | 8.3e-32 | 110.3 |
| pfu_aug2.0_241.1_03869.t1 | 1 | 1 | 7TM_GPCR_Srv | 2 | 195 | 1.3e-07 | 31.0 | 5.0e-11 | 1.5e-07 | 30.8 |
| pfu_aug2.0_241.1_03869.t1 | 1 | 1 | 7TM_GPCR_Srsx | 6 | 194 | 5.4e-06 | 25.7 | 2.2e-09 | 6.6e-06 | 25.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_241.1_03869.t1 | gi|556965252|ref|XP_005992236.1| | PREDICTED: melanopsin-A-like isoform X2 [Latimeria chalumnae] | 3.0e-33 |
| pfu_aug2.0_241.1_03869.t1 | gi|556965249|ref|XP_005992235.1| | PREDICTED: melanopsin-A-like isoform X1 [Latimeria chalumnae] | 3.0e-33 |
| pfu_aug2.0_241.1_03869.t1 | gi|657566432|ref|XP_008286556.1| | PREDICTED: melanopsin [Stegastes partitus] | 3.0e-32 |
| pfu_aug2.0_241.1_03869.t1 | gi|573886210|ref|XP_006630959.1| | PREDICTED: melanopsin-A-like [Lepisosteus oculatus] | 5.0e-31 |
Transcript
| Transcript ID | pfu_aug2.0_241.1_03869.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_241.1_03869.t1 atgtatacactttgtgctatatccatggacagatacgtggtcatagctatgccgctacattcctctaagatcactcatcg tgtggccaaactaagtgtcctgctgtgctggacattgggatttttctgggctgtggtccctttctttggatggagttact atgatttggaggcagcacacacatcatgtgcagtagtatgggaaagccatgatcccgttgtagttagctacaacataact attttcgttttcgtcttcttcattcctgttttggtcatgatgtttgcatatatcaggaatgtggccagaaacaatgtatg ggatatgacaagtaggattgcacgaaagaacctagccatagaaaagaagatgttcaaaacaatcttaattatggttggtg tgttcttgttcgcttggactccgtacgctgttgtatcattttgggcggccttcattggagctagagggattccagtggcg gtgcaaacagttcctgcaatggcagccaagtgttcttcggtgtgtgatccatttatatacgtggtcacaaacaaacaatt ccggaaggcattctacaaaatcatcccctgtgctggactgagacagaagcttgaagagatagaggacagggagccagaaa agtcaggtgaagacagcgggacctacagcaaatccaagaagcaagtagaacccccaaagaaggtcaacatggtacagcca atagaggaagatgaagtagagacacaggtagacaccattaggtcatctccaggtgtcaactcacaaaccaagagagacgc catagaactagaagatatcaatgaaggagaacaggctcaagcttaa |
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Protein
| Protein ID | pfu_aug2.0_241.1_03869.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_241.1_03869.t1 MYTLCAISMDRYVVIAMPLHSSKITHRVAKLSVLLCWTLGFFWAVVPFFGWSYYDLEAAHTSCAVVWESHDPVVVSYNIT IFVFVFFIPVLVMMFAYIRNVARNNVWDMTSRIARKNLAIEKKMFKTILIMVGVFLFAWTPYAVVSFWAAFIGARGIPVA VQTVPAMAAKCSSVCDPFIYVVTNKQFRKAFYKIIPCAGLRQKLEEIEDREPEKSGEDSGTYSKSKKQVEPPKKVNMVQP IEEDEVETQVDTIRSSPGVNSQTKRDAIELEDINEGEQAQA |
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