Gene
| Gene Model ID | pfu_aug2.0_241.1_03858 |
|---|---|
| Locus | scaffold241.1 : 106326 ... 130631 : + |
| To GenomeBrowser | scaffold241.1:106326..130631 |
| Genes list of scaffold | scaffold241.1 |
| Synonym | pfu_aug1.0_14608.1_61384 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_241.1_03858.t1 | 2 | 1 | RCC1 | 10 | 58 | 9.9e-19 | 67.2 | 1.9e-19 | 9.2e-16 | 57.7 |
| pfu_aug2.0_241.1_03858.t1 | 3 | 1 | RCC1_2 | 10 | 23 | 1.0e-07 | 31.3 | 0.00036 | 1.8 | 8.2 |
| pfu_aug2.0_241.1_03858.t1 | 3 | 2 | RCC1_2 | 46 | 76 | 1.0e-07 | 31.3 | 1.2e-08 | 5.8e-05 | 22.6 |
| pfu_aug2.0_241.1_03858.t1 | 2 | 2 | RCC1 | 65 | 127 | 9.9e-19 | 67.2 | 0.00015 | 0.73 | 10.0 |
| pfu_aug2.0_241.1_03858.t1 | 3 | 3 | RCC1_2 | 119 | 131 | 1.0e-07 | 31.3 | 0.49 | 2400.0 | -1.7 |
| pfu_aug2.0_241.1_03858.t1 | 3 | 1 | HECT | 472 | 501 | 0.0 | 288.7 | 3.8e-05 | 0.19 | 10.8 |
| pfu_aug2.0_241.1_03858.t1 | 3 | 2 | HECT | 505 | 609 | 0.0 | 288.7 | 1.3e-22 | 6.6e-19 | 68.2 |
| pfu_aug2.0_241.1_03858.t1 | 3 | 3 | HECT | 633 | 818 | 0.0 | 288.7 | 0.0 | 0.0 | 207.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_241.1_03858.t1 | gi|591359443|ref|XP_007054701.1| | PREDICTED: probable E3 ubiquitin-protein ligase HERC4 isoform X2 [Chelonia mydas] | 0.0 |
| pfu_aug2.0_241.1_03858.t1 | gi|564231470|ref|XP_006260129.1| | PREDICTED: probable E3 ubiquitin-protein ligase HERC4 [Alligator mississippiensis] | 0.0 |
| pfu_aug2.0_241.1_03858.t1 | gi|591359447|ref|XP_007054703.1| | PREDICTED: probable E3 ubiquitin-protein ligase HERC4 isoform X4 [Chelonia mydas] | 0.0 |
| pfu_aug2.0_241.1_03858.t1 | gi|558172265|ref|XP_006125336.1| | PREDICTED: probable E3 ubiquitin-protein ligase HERC4 isoform X4 [Pelodiscus sinensis] | 0.0 |
| pfu_aug2.0_241.1_03858.t1 | gi|557284034|ref|XP_006024872.1| | PREDICTED: probable E3 ubiquitin-protein ligase HERC4 isoform X1 [Alligator sinensis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_241.1_03858.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_241.1_03858.t1 atgtacataataatgcatttatttaaggatggtggtgtgttcacttttggttcaggtaactatggacaacttggtcattg ttcttccaataatgaaattttgccaaagaaagtcatggagctcatgggaagcacggtttcacaaatagcttgtggaagga gacacacattggcgtttgtgatgggcagtaggaggctgtactcctttggatgtggtgggtgtggtcagcaggggtctggg aacacggggtcaaggaatgcccctggctctgtacatgcccctttcttggttgggagtaatgtaaggaattctcagaccat ggatcacagtggtcagctgtacagtattaagaggctgtatgcaggaggtgaccactgctttgtccaagtagaggatgctg cacaaaatgattgtcagccagacgattatcgtgatacagatccgtccaagtctataacatatctgacagccgaaaaatgt gatgctgtacggcagttaacagctgatcaaagtcttcctgtagatttgacagaagatctgactaaaatcttctcctcggc agcatgtctgaatgcttcatttctacttccagatctgactaaaatcttctcctcggcagcatgtctgaatgcttcatttc tacttccagatgaggagcactatggatgtagtagtaagaagcatggtttagatatggatgaagtacggcgattactgaac aggataggtgatgctgttaatatcagtatcatacaaaagatagtagagagtatagagcacctgttgtcatctttaccgag ctctcctcccgatgtagaagctctacgtttataccttatactaccagaattacatatctttgatcaacctaaatacttca gtacgctgataacaccatttggagcatctcttaataaccttgacaaggctgcttcacgtatcttagatctgtggtgggga tcgttgaaatccagatttatagctagacttgtatatgtgttcaaacaaaccattgtgtatatacttcaactaccagattc catgattgacagggagatggctagcagatttaccggtgttcgtgttagtttagaagttttgaagaagcttaacacagtca gtgagaagaacgggcagatagtaccatatcatcatttctacattcctgaactcaaagataaagtcaatataaaacaggat tacgctcagtgggttcaacaaaacatgatgttttcaaggcctcatctctccttctgtaactacccatttgtctttgatgg tgcagcaaaaagtatgctcctacaaacagatgcatttatgcagatgcagagagactgtgtcatattattacaggtcatat ttatgggggaggaggctgtagatgagggcggtgtcagaaaggaattcttcctccttctacttcgtgaaataatggatccc aaatatggcatgttcaaggtgtatgaggagtctcgtttacaatggtttaatccaatggtaacagtggagagttttggatc tgtacatagtgttcctttggtaaatgatggtgcaaataaatctgtcaatagggaaaacagacaggagtacatagacctgt atatagactttatattcaacaagtcagtagagaatcagtacagtggcttccaagatggatttctaaaagtctgtggaggg agggtgctagaactatttcatccacaagaacttcaggccatggtggtagggaatgaaaattatgattttcttgaattgga aaagttccacagttcacagtctacatcacatcacagtacgtcacaacaccagcgcgtggccactctcacagttcatgtcc acgttgtaaggcgctcgtcgtggtttacaccatggaggcaggtaacagtggagagttttggatctgtgcatagtgttcct ttagtaaatgatggtgcaaataaatctgtcaatagggaaaacagacaggagtacatagacctgtatatagactttatatt caacaagtcagtagagaatcagtacagtggcttccaagatggattccttaaagtctgtggaggcagggtgctagagctat ttcatccacaagaacttcaggccatggtggtagggaatgaaaattatgattttcttgaattggaaaagaacaccatgtat aaaggagactatcacaggtatcatccaaccattgtgtggttttgggatgttttccatgaattaccgttagatgataaaaa gaaattcctcatgtacctgactggtagtgacagaatacctatactcggcatgcaggccgtcagaatgttcatacaaccta cggagggcggtgataaatatctacccgtggctcatacgtgctttaatctgttagacttgccaaaatattctagtaaacaa attctccaagaaaaattgactatggctatagaacaaacagaaggctttggcattgtgtag |
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Protein
| Protein ID | pfu_aug2.0_241.1_03858.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_241.1_03858.t1 MYIIMHLFKDGGVFTFGSGNYGQLGHCSSNNEILPKKVMELMGSTVSQIACGRRHTLAFVMGSRRLYSFGCGGCGQQGSG NTGSRNAPGSVHAPFLVGSNVRNSQTMDHSGQLYSIKRLYAGGDHCFVQVEDAAQNDCQPDDYRDTDPSKSITYLTAEKC DAVRQLTADQSLPVDLTEDLTKIFSSAACLNASFLLPDLTKIFSSAACLNASFLLPDEEHYGCSSKKHGLDMDEVRRLLN RIGDAVNISIIQKIVESIEHLLSSLPSSPPDVEALRLYLILPELHIFDQPKYFSTLITPFGASLNNLDKAASRILDLWWG SLKSRFIARLVYVFKQTIVYILQLPDSMIDREMASRFTGVRVSLEVLKKLNTVSEKNGQIVPYHHFYIPELKDKVNIKQD YAQWVQQNMMFSRPHLSFCNYPFVFDGAAKSMLLQTDAFMQMQRDCVILLQVIFMGEEAVDEGGVRKEFFLLLLREIMDP KYGMFKVYEESRLQWFNPMVTVESFGSVHSVPLVNDGANKSVNRENRQEYIDLYIDFIFNKSVENQYSGFQDGFLKVCGG RVLELFHPQELQAMVVGNENYDFLELEKFHSSQSTSHHSTSQHQRVATLTVHVHVVRRSSWFTPWRQVTVESFGSVHSVP LVNDGANKSVNRENRQEYIDLYIDFIFNKSVENQYSGFQDGFLKVCGGRVLELFHPQELQAMVVGNENYDFLELEKNTMY KGDYHRYHPTIVWFWDVFHELPLDDKKKFLMYLTGSDRIPILGMQAVRMFIQPTEGGDKYLPVAHTCFNLLDLPKYSSKQ ILQEKLTMAIEQTEGFGIV |
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