Gene
| Gene Model ID | pfu_aug2.0_233.1_10482 |
|---|---|
| Locus | scaffold233.1 : 259473 ... 290965 : + |
| To GenomeBrowser | scaffold233.1:259473..290965 |
| Genes list of scaffold | scaffold233.1 |
| Synonym | pfu_aug1.0_15611.1_10841 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| serine threonine-protein kinase greatwall | GO:0006796 GO:0016301 GO:0022402 GO:0044464 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_233.1_10482.t1 | 2 | 1 | Pkinase | 27 | 67 | 4.3e-13 | 49.0 | 6.3e-07 | 0.0047 | 16.1 |
| pfu_aug2.0_233.1_10482.t1 | 2 | 1 | Pkinase_Tyr | 28 | 65 | 9.8e-07 | 28.1 | 8.9e-05 | 0.66 | 8.9 |
| pfu_aug2.0_233.1_10482.t1 | 2 | 2 | Pkinase | 87 | 119 | 4.3e-13 | 49.0 | 2.3e-11 | 1.7e-07 | 30.6 |
| pfu_aug2.0_233.1_10482.t1 | 2 | 2 | Pkinase_Tyr | 87 | 120 | 9.8e-07 | 28.1 | 4.3e-07 | 0.0032 | 16.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_233.1_10482.t1 | gi|597758651|ref|XP_007241026.1| | PREDICTED: serine/threonine-protein kinase greatwall-like [Astyanax mexicanus] | 6.0e-28 |
| pfu_aug2.0_233.1_10482.t1 | gi|564392465|ref|XP_006254403.1| | PREDICTED: microtubule-associated serine/threonine-protein kinase-like isoform X2 [Rattus norvegicus] | 2.0e-24 |
| pfu_aug2.0_233.1_10482.t1 | gi|702433495|ref|XP_010069428.1| | PREDICTED: uncharacterized protein LOC104456354 isoform X2 [Eucalyptus grandis] | 9.0e-20 |
| pfu_aug2.0_233.1_10482.t1 | gi|676449270|ref|XP_009052001.1| | hypothetical protein LOTGIDRAFT_115088, partial [Lottia gigantea] | 1.0e-19 |
| pfu_aug2.0_233.1_10482.t1 | gi|567884803|ref|XP_006434960.1| | hypothetical protein CICLE_v10003473mg [Citrus clementina] | 3.0e-19 |
Transcript
| Transcript ID | pfu_aug2.0_233.1_10482.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_233.1_10482.t1 atggatagagaggaaaatgtagcgatctgctcccctcagaagtctgtacaaatgtacaaagctccaacaatagaagattt tcatcttttaaagccaataagcagaggagcttttgggaaagttttccttggccataagaagacatcaccagacaaactgt atgctataaaagttatgaagaaatctgatatggtcaataaaaatctgggatgccaagtgaccttgacattgacctttgac ctacttttatactataagagggatcttaaaccagacaacatgcttatcaccgagaagggacacataaagttgacagactt tggtttgtcaaagatcggcataagtatcgaaaagatgcataaagatttgtcacagacccctctaccatacagcaacaaaa tcaactttgtcagaaccccaggacaaattctctcccttagaagtaatctcggactgaatctgcctacaataggaatggat gttatagatgaagaatcgttaaatcactcacgatcagttttgtctagaaatgaagtgggatcaacgccaatgtcgctacg tgaaagggttcttagccatagcacaatggcaaggcttactccccctgttcagaatttgacaccttcactacatcttgaaa cttctagagttacaaagaatctgagatctatgagagatggactttactcagaggacagtgatgatgcagatgattttagc agtactagcagctcagacgagaaacatagtcacatgttggaaagagaagtgatcaggacttttgatgaggataagtgtat ggcttccagaaccttagacaagaggaaaacaaatcagaaaagttttgtataccactccgatgaagatgaacaaggttcta gatttggttcgaatcaacggaagcggaaattcattgatgtggagaagagtccttttcctagaaatgcgagtaataagtcc ggtctgacacaagaaattagaatgatggatctgcatcgtaccgaattaaataaacgaaaatgtattaattctgttggaaa atgtgttggaagttatgaaaattcaccgacaggtagctgtgcttcctctagtcagtgtgaagtaggagaatacattgtaa actctgatagaaaagaagacactgtagatggtgctgatccatttaaacaatgtcacaagcatctaaatctgcacgaggga gcatcagagatggagacagattgctgtgttacttcagagaaggtttctcctttgaaggagatcaagtttaatactttcat ggccagtatcattgaggatagagcacggcacagcagctcaccttccatgtctgtacctagtacaccggaacttaagttac attccaagagagcaagtttaatactttcatggccaacatcgccaaggactgagcacggcacaacaactcaccttccatgt ctgtacctagtacacctgaacttaagttacattccaaggtcgaaagtagttttagcaaggatttccggaagtgggcgtgt ccaattaagcaaaccgatttatggagaggttagacacatggattttttcgatgggattgactggaacaatctgctggatg tagaagcaccatttgtaccgaacccagatgatgccacagacacaagctattttgatgcaaggaatatcatgcaagaatta attgtatctggagttgacttttga |
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Protein
| Protein ID | pfu_aug2.0_233.1_10482.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_233.1_10482.t1 MDREENVAICSPQKSVQMYKAPTIEDFHLLKPISRGAFGKVFLGHKKTSPDKLYAIKVMKKSDMVNKNLGCQVTLTLTFD LLLYYKRDLKPDNMLITEKGHIKLTDFGLSKIGISIEKMHKDLSQTPLPYSNKINFVRTPGQILSLRSNLGLNLPTIGMD VIDEESLNHSRSVLSRNEVGSTPMSLRERVLSHSTMARLTPPVQNLTPSLHLETSRVTKNLRSMRDGLYSEDSDDADDFS STSSSDEKHSHMLEREVIRTFDEDKCMASRTLDKRKTNQKSFVYHSDEDEQGSRFGSNQRKRKFIDVEKSPFPRNASNKS GLTQEIRMMDLHRTELNKRKCINSVGKCVGSYENSPTGSCASSSQCEVGEYIVNSDRKEDTVDGADPFKQCHKHLNLHEG ASEMETDCCVTSEKVSPLKEIKFNTFMASIIEDRARHSSSPSMSVPSTPELKLHSKRASLILSWPTSPRTEHGTTTHLPC LYLVHLNLSYIPRSKVVLARISGSGRVQLSKPIYGEVRHMDFFDGIDWNNLLDVEAPFVPNPDDATDTSYFDARNIMQEL IVSGVDF |
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