Gene
| Gene Model ID | pfu_aug2.0_233.1_10476 |
|---|---|
| Locus | scaffold233.1 : 132504 ... 143755 : - |
| To GenomeBrowser | scaffold233.1:132504..143755 |
| Genes list of scaffold | scaffold233.1 |
| Synonym | pfu_aug1.0_2702.1_30222 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_233.1_10476.t1 | 3 | 1 | Lectin_C | 1 | 100 | 2.1e-27 | 95.8 | 2.4e-13 | 7.0e-10 | 39.4 |
| pfu_aug2.0_233.1_10476.t1 | 3 | 2 | Lectin_C | 170 | 281 | 2.1e-27 | 95.8 | 5.8e-21 | 1.7e-17 | 63.9 |
| pfu_aug2.0_233.1_10476.t1 | 3 | 3 | Lectin_C | 299 | 327 | 2.1e-27 | 95.8 | 5.0 | 15000.0 | -3.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_233.1_10476.t1 | gi|542248493|ref|XP_005460676.1| | PREDICTED: type-2 ice-structuring protein-like [Oreochromis niloticus] | 4.0e-20 |
| pfu_aug2.0_233.1_10476.t1 | gi|524876180|ref|XP_005094809.1| | PREDICTED: C-type lectin domain family 4 member F-like [Aplysia californica] | 4.0e-20 |
Transcript
| Transcript ID | pfu_aug2.0_233.1_10476.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_233.1_10476.t1 atgggaagttacttggtaagggtgaatgattttaaagaaaacgaatggatcaagatccagatcagatctacagtgcgctg gaacacttggactggtggtgttgactttggtcatgaaggaaaatggaagtgggaatctaatggaaaatcggtagcatatc gagatttcattagaggtcaaccaaacaatgttggcaataatgagcattgcttggaattctatggttctggttctgtacat tcgtacaagtggaacgaccataactgtggtaaccataaggcatactctttatgtgagaagaacagaatagttttagaaac cgtagaggagattttgctctctgggaggatttcctgccaattcgagcgaattccttcaataacctttaaacaagagacat ttcaaccattaggtcggtatctctgcttatggacttgtttatttgccacagtttgtgatcctggatggttaacttatggt gatcattgttacttaatggtgaagaagaagaagacatggtatgatgcaaagagcaactgtgattcaatgggaagttactt ggtaagggtggatgatattgaagaaaacgaatggatcaaggtccagatcagatctacagttcgcggtagaacttggactg gtggtgttaactttggtcacgaagggaaatggaaatgggaatccaacgggaaatttgtagcattacaagatttccatagt ggccagcctgacaatgctagcaataaggagcattgcttggaattccatggatctggttcagaaaattcgtacaagtggaa cgacattccctgtgactttaagacatactctttatgtgaaaagaaaagttcaaatatattcaaagtcatttcattattcg aaatggaacaaattgcaaagaaattacgtaatcagttaaagaagagatccccaacattacatattgaagcacacgcacga caaaacggaaacatacaccacgagaacaattacgtcacctaa |
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Protein
| Protein ID | pfu_aug2.0_233.1_10476.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_233.1_10476.t1 MGSYLVRVNDFKENEWIKIQIRSTVRWNTWTGGVDFGHEGKWKWESNGKSVAYRDFIRGQPNNVGNNEHCLEFYGSGSVH SYKWNDHNCGNHKAYSLCEKNRIVLETVEEILLSGRISCQFERIPSITFKQETFQPLGRYLCLWTCLFATVCDPGWLTYG DHCYLMVKKKKTWYDAKSNCDSMGSYLVRVDDIEENEWIKVQIRSTVRGRTWTGGVNFGHEGKWKWESNGKFVALQDFHS GQPDNASNKEHCLEFHGSGSENSYKWNDIPCDFKTYSLCEKKSSNIFKVISLFEMEQIAKKLRNQLKKRSPTLHIEAHAR QNGNIHHENNYVT |
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