Gene
| Gene Model ID | pfu_aug2.0_233.1_10475 |
|---|---|
| Locus | scaffold233.1 : 79896 ... 90583 : + |
| To GenomeBrowser | scaffold233.1:79896..90583 |
| Genes list of scaffold | scaffold233.1 |
| Synonym | pfu_aug1.0_1152.1_15373 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| x-ray repair cross-complementing protein 5-like | GO:0000723 GO:0003684 GO:0003690 GO:0004003 GO:0005515 GO:0005730 GO:0005737 GO:0006303 GO:0007420 GO:0032508 GO:0042162 GO:0043564 GO:0045893 GO:0071475 GO:0071481 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_233.1_10475.t1 | 1 | 1 | Ku_N | 32 | 251 | 0.0 | 178.2 | 0.0 | 0.0 | 177.7 |
| pfu_aug2.0_233.1_10475.t1 | 3 | 1 | Ku_C | 175 | 180 | 4.3e-15 | 56.0 | 3.0 | 9000.0 | -2.8 |
| pfu_aug2.0_233.1_10475.t1 | 3 | 2 | Ku_C | 227 | 249 | 4.3e-15 | 56.0 | 1.8 | 5400.0 | -2.1 |
| pfu_aug2.0_233.1_10475.t1 | 1 | 1 | Ku | 257 | 371 | 2.4e-25 | 89.1 | 1.3e-28 | 3.8e-25 | 88.4 |
| pfu_aug2.0_233.1_10475.t1 | 3 | 3 | Ku_C | 382 | 453 | 4.3e-15 | 56.0 | 2.7e-18 | 8.0e-15 | 55.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_233.1_10475.t1 | gi|524880090|ref|XP_005096713.1| | PREDICTED: X-ray repair cross-complementing protein 5-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_233.1_10475.t1 | gi|676448655|ref|XP_009051802.1| | hypothetical protein LOTGIDRAFT_182021 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_233.1_10475.t1 | gi|115618058|ref|XP_001180453.1| | 0.0 | |
| pfu_aug2.0_233.1_10475.t1 | gi|196015567|ref|XP_002117640.1| | hypothetical protein TRIADDRAFT_61626 [Trichoplax adhaerens] | 0.0 |
| pfu_aug2.0_233.1_10475.t1 | gi|260805378|ref|XP_002597564.1| | hypothetical protein BRAFLDRAFT_281658 [Branchiostoma floridae] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_233.1_10475.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_233.1_10475.t1 atggcagattttggttttgctcagtttgaagatgaagaaaatgaagaggagggagaatcaggatttcaggcatactattc catgagggatggtttgatcttccttatcgactgttctaagtctatgtttgacagagacgatactgacgatgatgaagaag aatcacatttccagctctgtgttcggtgtgcaaagacaactttgcagaataagataataagcagtgataaagatctggtt ggaattgtatttatgggaacggaaaaatcggacaaccctagtgacttcaagcacatctccgtatatcagcccttagatca acctggtgcaccgagaattatagaacttgaagaaatgctggaagagggtttcaagactttcagtaaagactatggtcaca atacagggttttcattaagtgaagtcttatggacgtgccaaaatatgttctcaaacagtccacagaaagtgaattcaaag agaatcatgttattcaccaacaatgacaacccgcacgcaggaaatcctcagttacagagacaagcgaagacaaaggcaag tgacttgtacgagacaggaatagacttagaattgatgcatcttcagaaatctggcgaaagctttgatgtcaacaagtttt acaaggacctcctgtacacagcagatgatgagttgacagaccttccggatccttcggagagaattgatgatttactcaca agggtaagatccaaagaccacaagaagagagcccaaaggcggattccactgtcattagggccgggaatggaattaggtgt aggggtgtacactctagttaggccttgttataaaccatccacagtaaaactgtcaaggaacacaaatgaggagctgaaaa cccactccaaggtttatgtgcaggacacaggagaagttttgatgcctcaggatctgaagaaagctcaaacttacgggggt aagcagatatgttttgagaatgatgaagtcatagaaattaagaaatttggagaatctgggttccatttgatgggatttaa gcccaccagctgcttaaagaaatactatcacgttaaacctgcacagttcatatatcccgatgaaacgatagacaaagcca aagaaatcataaagaagttaggcttcacatttaatagtgaggcttttgaaaatcctgtcatccagaaatattggaggaat attgaggccctggctctggacaaagacgccccggaggaattccaggattttacaatgccaaatgatgagaaaatgttaaa gagagctggaaaagtaatagaagaattcaaagaccttgttttccctgcaggatatgaaccaggaagtaaaaagaggaaag ctggagttagggaagttgacagttcctgtactgaaagaaataatcaagaaagaggggataactcctga |
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Protein
| Protein ID | pfu_aug2.0_233.1_10475.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_233.1_10475.t1 MADFGFAQFEDEENEEEGESGFQAYYSMRDGLIFLIDCSKSMFDRDDTDDDEEESHFQLCVRCAKTTLQNKIISSDKDLV GIVFMGTEKSDNPSDFKHISVYQPLDQPGAPRIIELEEMLEEGFKTFSKDYGHNTGFSLSEVLWTCQNMFSNSPQKVNSK RIMLFTNNDNPHAGNPQLQRQAKTKASDLYETGIDLELMHLQKSGESFDVNKFYKDLLYTADDELTDLPDPSERIDDLLT RVRSKDHKKRAQRRIPLSLGPGMELGVGVYTLVRPCYKPSTVKLSRNTNEELKTHSKVYVQDTGEVLMPQDLKKAQTYGG KQICFENDEVIEIKKFGESGFHLMGFKPTSCLKKYYHVKPAQFIYPDETIDKAKEIIKKLGFTFNSEAFENPVIQKYWRN IEALALDKDAPEEFQDFTMPNDEKMLKRAGKVIEEFKDLVFPAGYEPGSKKRKAGVREVDSSCTERNNQERGDNS |
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