Gene
| Gene Model ID | pfu_aug2.0_233.1_10473 |
|---|---|
| Locus | scaffold233.1 : 35556 ... 41401 : + |
| To GenomeBrowser | scaffold233.1:35556..41401 |
| Genes list of scaffold | scaffold233.1 |
| Synonym | NA |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| transmembrane emp24 domain-containing protein 5-like | GO:0012505 GO:0016020 GO:0043231 GO:0044444 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_233.1_10473.t1 | 1 | 1 | EMP24_GP25L | 2 | 142 | 1.4e-24 | 86.7 | 6.7e-28 | 2.0e-24 | 86.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_233.1_10473.t1 | gi|591362064|ref|XP_007055944.1| | PREDICTED: transmembrane emp24 domain-containing protein 1 [Chelonia mydas] | 3.0e-35 |
| pfu_aug2.0_233.1_10473.t1 | gi|530566239|ref|XP_005279662.1| | PREDICTED: transmembrane emp24 domain-containing protein 1 [Chrysemys picta bellii] | 5.0e-35 |
| pfu_aug2.0_233.1_10473.t1 | gi|676448276|ref|XP_009051680.1| | hypothetical protein LOTGIDRAFT_228384 [Lottia gigantea] | 2.0e-34 |
| pfu_aug2.0_233.1_10473.t1 | gi|558131006|ref|XP_006116336.1| | PREDICTED: transmembrane emp24 domain-containing protein 1 [Pelodiscus sinensis] | 5.0e-34 |
| pfu_aug2.0_233.1_10473.t1 | gi|499010629|ref|XP_004557271.1| | PREDICTED: transmembrane emp24 domain-containing protein 5-like [Maylandia zebra] | 2.0e-33 |
Transcript
| Transcript ID | pfu_aug2.0_233.1_10473.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_233.1_10473.t1 atggacataggctttacactacaggctccagatggaagggtgattgtttcagaaatgcaaaaatctgatggagttcacaa aatagatgcttcattcccaggtgattataagatatgctttgataacaccttcagccattttgcacgtaaagttgttttct ttgaattgtctgctgacaatgatgatgaagatgatgaggatgatgaaaaggacttaaaaaatgagagggaggagttagcc agcattatagatatgactctggaagattttaagaaattgttggataatgtaaaaaacaacttggacaagaccgaagctga tcaacaagttttaaaaaattacgaagcaagagacagaaatgtacaagagtcaaattttcaacgtgttaactttttttcgg gacttcaagtctttataatggtaggggatagccatacattaaaatactaa |
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Protein
| Protein ID | pfu_aug2.0_233.1_10473.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_233.1_10473.t1 MDIGFTLQAPDGRVIVSEMQKSDGVHKIDASFPGDYKICFDNTFSHFARKVVFFELSADNDDEDDEDDEKDLKNEREELA SIIDMTLEDFKKLLDNVKNNLDKTEADQQVLKNYEARDRNVQESNFQRVNFFSGLQVFIMVGDSHTLKY |
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