Gene
| Gene Model ID | pfu_aug2.0_23.1_10128 |
|---|---|
| Locus | scaffold23.1 : 654187 ... 684759 : + |
| To GenomeBrowser | scaffold23.1:654187..684759 |
| Genes list of scaffold | scaffold23.1 |
| Synonym | pfu_aug1.0_17039.1_39894 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_23.1_10128.t1 | 4 | 1 | FAM178 | 597 | 615 | 1.4e-09 | 37.2 | 1.0 | 15000.0 | -6.4 |
| pfu_aug2.0_23.1_10128.t1 | 4 | 2 | FAM178 | 849 | 910 | 1.4e-09 | 37.2 | 0.022 | 320.0 | -0.3 |
| pfu_aug2.0_23.1_10128.t1 | 4 | 3 | FAM178 | 948 | 985 | 1.4e-09 | 37.2 | 0.0018 | 26.0 | 3.3 |
| pfu_aug2.0_23.1_10128.t1 | 4 | 4 | FAM178 | 997 | 1098 | 1.4e-09 | 37.2 | 9.2e-14 | 1.4e-09 | 37.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_23.1_10128.t1 | gi|524865322|ref|XP_005089491.1| | PREDICTED: protein FAM178A-like isoform X1 [Aplysia californica] | 2.0e-09 |
| pfu_aug2.0_23.1_10128.t1 | gi|524865324|ref|XP_005089492.1| | PREDICTED: protein FAM178A-like isoform X2 [Aplysia californica] | 3.0e-09 |
Transcript
| Transcript ID | pfu_aug2.0_23.1_10128.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_23.1_10128.t1 atgagtgggcattactggcagaacaacaattttccacaaagaaacaggccaccaaattttacccaatcgggccagaattt tggccaaacgaatcaatttcaacgaggttttattggtggaagtaatcatggatttaataatagtaataacatgtggatga gacagaattgctttcctaatccaaatgctccacgttcctttgtgcagttcggaagaaggtcaccgcttttgcaaaaccca acctggcaacagtcacagtatgctaattataaccagaataatacttggaataacatgccctacagaccctcatccaatca tcacgaccaaaggaagaatccaggaaatttttccaatacaaaaagtggaattggtataaagaaaacaaattctcaagagg tgaccaagaatgttccaaagcaaagtgaagtaccgtttacttcaaagaaagaagtaacagtcaattcccttgaaatgacc aacactggcactgcaaacaaaagcaatttaattgtcatcaaaggtgtgtcacctgaaaagaagtttgcaggagggaaaag accagaggaccctgttgcccagagaccactagattcaaaaccagtggaccatagatctacatcagtaacccaacaaagag caccgacacaggcagttattggtggtagtcaacctaatcctccgaaaagatcaaacgagagcttcgttgcatccaatagt tcatacaccagaagtcagcatgaaacggttaagaggtcactattgataaacgaaggctctgtatcagacgcatcaaattc tagtcatacttcaacaagcagcacagtgtcatcaacacatgttcctacaagaatttctgaacatgatcatcatcagtcta ggtcgagcaatctgagtgattcaatagagggatcttcaaacagtgtagagaagcagaaaaattacgcacatgaggatctt ggtctttcgacaaggctgaatatttctcatactgaaaattcacccatcaaaggaaacaaaagtcaaaagtctcctagatc atcaaacaaggtgtctcctgctaaagggacttctccaagtaagccgaatcctgaacttggaagtggatactttgaacttg cttctacactgaatactttgagaggcggcagtgaagactcgcactctcttgattcttcggtgctctcaagtaatgcatca aatactaaagagtccactactgtgtcagttgtagacaataaacaaaaatcagattttggaagtggatacttggggcttgc ttcaagtttgaacaatttaagaagcaatttgcacagcaattctcaaactgcagaatctttagtatcacaaaaggcttcta cttcaaaggaatctgcctctgaatcagttgttgaaaacactgaacttattcatggatgctttgaacttgcagcgactttg aagactttaaaaagcagtttgcaaggtgaagactcacaaactggaaattcctcagtgctacctaaagcaacaattttacc agagcctgtcacagagtcgtttataaacaataagcaaaagcttgaacataaagcagacttgaacctttgtgctgaaacaa agtttggtactaaaacaaaccttggtgctaaaacaaatccagtatctacaggaggttttcagtctggttcaagtagtagg aattccagtgacaaaccaaattctgaaggaaaagaggctaagaaaactacaccaactttcaccaaggctccacaaactta caaagaatatagagaggctaaacaaagggaagaggaagagagaaagagggaggcgaaacaaaaagaagaggaagaaagaa agaagatggaggctagaagacttgctcatcttcaacaaaggaagcacagacatcactcatactctcatagtagcagccat aacaagcaaagagaggagttcaagcaacggtctttaagcactgaattaggaaacaaaggggtcaaaacaggcccttttca agccggcacagaaaaggctcatcacatttatcagtcctctagctactttagtccaggggagccagtagcaacggaaaaaa gtccatcacctgtcaaacaaaagttaccatttcggtcagaaaattcaagtttttctttgtactctaaaaaggatcctatc agaattaaggtggaggacgaagggaagtcagagaaatctggtcatgcagcagagcaagccgataaagaagctggtaaaaa tgagacaagtgcaagtgaaatggagtgttccaaagatgaagaattgccaggtattgtcgtacagaggaggaattcaaata aatttgtcgaaagaactccaagcagttcaaggaagaattctcaggaatcttacaggagcgactctcaagatagtgttctg tacagacgggagtcacagggatctgggagaaagcctgtgcctagaacacctcccccaaagacacatgggagccccgtaca cagtaacagtcctgtacccctagggcaggtatctaaccctcccaaactccccattacaaagttctccctggatgggctcc tgtctgaagaagttgacaagacaaaagagcagcttaatttagagaagattcaggccaaactagagaaagatgtaagaacg ggcggatttcagttggacctcgatgaacaaaaagaaaaagagggacaaccatcaggtgagctcctaccagagcagaagga acacatacaaagcattttatactgtgcttttaacaattatacccatgctaacgaagtgtccacagaggagagcagcctgg ctgtagacggttgttttgacgttctggaggagtattattattgtgagaaacattttaacgacagagaagtgccgtcctgg gctccctccgtcaaagacatgctctcggcattgtgcaattttgataaaagtggcagcttacatcagcagcagaatttacc agcagtgagaaacggaacgcctggattccagattgaaaatttacgattagtgttagtagttcttacgtatggattacaat caagggcaaagtacaagaaggaagagcttactgccttacttgtgatgttatgtcgagcagcattagatgaacgtctctct agtgaactactaacgctagaactccagtgttgtatttgggccattgtgcagaaatactcagaaactgactgggaatctca gcatgtaatgttatgtgccatcctgtcagccgttaccagccaccatcacaatgccgtgtatgtatgtggacttttacctc tcttaccgagagggatgtatcataaagtgaanctaatgctacagtaa |
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Protein
| Protein ID | pfu_aug2.0_23.1_10128.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_23.1_10128.t1 MSGHYWQNNNFPQRNRPPNFTQSGQNFGQTNQFQRGFIGGSNHGFNNSNNMWMRQNCFPNPNAPRSFVQFGRRSPLLQNP TWQQSQYANYNQNNTWNNMPYRPSSNHHDQRKNPGNFSNTKSGIGIKKTNSQEVTKNVPKQSEVPFTSKKEVTVNSLEMT NTGTANKSNLIVIKGVSPEKKFAGGKRPEDPVAQRPLDSKPVDHRSTSVTQQRAPTQAVIGGSQPNPPKRSNESFVASNS SYTRSQHETVKRSLLINEGSVSDASNSSHTSTSSTVSSTHVPTRISEHDHHQSRSSNLSDSIEGSSNSVEKQKNYAHEDL GLSTRLNISHTENSPIKGNKSQKSPRSSNKVSPAKGTSPSKPNPELGSGYFELASTLNTLRGGSEDSHSLDSSVLSSNAS NTKESTTVSVVDNKQKSDFGSGYLGLASSLNNLRSNLHSNSQTAESLVSQKASTSKESASESVVENTELIHGCFELAATL KTLKSSLQGEDSQTGNSSVLPKATILPEPVTESFINNKQKLEHKADLNLCAETKFGTKTNLGAKTNPVSTGGFQSGSSSR NSSDKPNSEGKEAKKTTPTFTKAPQTYKEYREAKQREEEERKREAKQKEEEERKKMEARRLAHLQQRKHRHHSYSHSSSH NKQREEFKQRSLSTELGNKGVKTGPFQAGTEKAHHIYQSSSYFSPGEPVATEKSPSPVKQKLPFRSENSSFSLYSKKDPI RIKVEDEGKSEKSGHAAEQADKEAGKNETSASEMECSKDEELPGIVVQRRNSNKFVERTPSSSRKNSQESYRSDSQDSVL YRRESQGSGRKPVPRTPPPKTHGSPVHSNSPVPLGQVSNPPKLPITKFSLDGLLSEEVDKTKEQLNLEKIQAKLEKDVRT GGFQLDLDEQKEKEGQPSGELLPEQKEHIQSILYCAFNNYTHANEVSTEESSLAVDGCFDVLEEYYYCEKHFNDREVPSW APSVKDMLSALCNFDKSGSLHQQQNLPAVRNGTPGFQIENLRLVLVVLTYGLQSRAKYKKEELTALLVMLCRAALDERLS SELLTLELQCCIWAIVQKYSETDWESQHVMLCAILSAVTSHHHNAVYVCGLLPLLPRGMYHKVXLMLQ |
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