Gene
| Gene Model ID | pfu_aug2.0_23.1_10124 |
|---|---|
| Locus | scaffold23.1 : 601487 ... 622551 : + |
| To GenomeBrowser | scaffold23.1:601487..622551 |
| Genes list of scaffold | scaffold23.1 |
| Synonym | pfu_aug1.0_2276.1_44304 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_23.1_10124.t1 | 1 | 1 | CutC | 4 | 77 | 8.3e-21 | 74.1 | 1.1e-23 | 1.9e-20 | 73.0 |
| pfu_aug2.0_23.1_10124.t1 | 3 | 1 | zf-B_box | 96 | 142 | 4.0e-07 | 29.8 | 3.1e-07 | 0.00052 | 19.8 |
| pfu_aug2.0_23.1_10124.t1 | 3 | 2 | zf-B_box | 156 | 191 | 4.0e-07 | 29.8 | 4.1e-07 | 0.00067 | 19.5 |
| pfu_aug2.0_23.1_10124.t1 | 3 | 3 | zf-B_box | 511 | 521 | 4.0e-07 | 29.8 | 5.0 | 8200.0 | -3.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_23.1_10124.t1 | gi|657552529|ref|XP_008280638.1| | PREDICTED: copper homeostasis protein cutC homolog [Stegastes partitus] | 2.0e-20 |
| pfu_aug2.0_23.1_10124.t1 | gi|657786272|ref|XP_008320224.1| | PREDICTED: copper homeostasis protein cutC homolog [Cynoglossus semilaevis] | 5.0e-20 |
| pfu_aug2.0_23.1_10124.t1 | gi|734597543|ref|XP_010742770.1| | PREDICTED: copper homeostasis protein cutC homolog [Larimichthys crocea] | 7.0e-20 |
| pfu_aug2.0_23.1_10124.t1 | gi|348507403|ref|XP_003441245.1| | PREDICTED: copper homeostasis protein cutC homolog isoform X1 [Oreochromis niloticus] | 8.0e-20 |
| pfu_aug2.0_23.1_10124.t1 | gi|148238237|ref|NP_001090148.1| | cutC copper transporter [Xenopus laevis] | 2.0e-19 |
Transcript
| Transcript ID | pfu_aug2.0_23.1_10124.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_23.1_10124.t1 atgttgacgatagtcaagcggtattgtaaaattcctgtctatgttatgatacgccccaggggtggggatttcctctacaa cacgacagaatttgaggtgatgcaagaggatatcatggccttgcaagaaggcggagctgatggatttgtgttcggatgtc ttaaaagtgatggccgtattgaggaggagatgtgcagtgaatttatacattggtccaaaagacttcccacgaaccatgtt ctagtaaacttgattgacatgaataaaacactgtctggttctaagctctgcagtgcttgtgcaagggatagtgagaagga agttgcacaatcttggtgcttgaattgttgcgaagcactttgtgctgtatgcgtaaaatgccatcggaagagtaaagcta ctgcgtcacataaatttgttgacatccaaaatgaaggaacggaaatgtccctacaaagtgcggatgtgttctgcacggag catccaagcaaactcctagaagcgtactgttccgaccattccaaagtatgctgtatgtcttgtgtcatgcttaaacatag aaaatgcaaccatgtgggttctgttgaagatgctgcaaaggaaaagaagtcatctgtattcacgcaggaaatcgagtgtg ctttcagtcaaatgaaagatgatctggaagtcatgatagaagagagagatgaaaatataaaagcatttgagggaagcatt gaacaaatgaaagatgatgccaataaactcttcaaagaaatcagcacgcatatagaatggctgaaatacagagcatttga tgatatttctgcacttcaaaagaagatattgcatgaaattaaggatgacaagcaggatctgcagcacagaatttccgcgg tgaaatatcatctagcgctttttcatacaaatgtaaagtatgcttcaccagctcaattcttaattgcaatggaaaagctg tcagagcagaaagaaatctgcgaggaattcacagatgagaagaagaatggaaaaagaacggtaattgtaaaatgcaggat ggacaaaagcctctccaagatttccaaagaggcaaagaggttccttgcgtacagggttttgagagttcaggcatcaagtc tgaaagagccggagcttcttgaaaatattacaacagagggccgattatctgtttctggaatagcttttctgacgaacgac tacttgcttgcttccatctgcggagataagtgcctggagttgtggaatgatcagtacgaacttgtatcaacaataaaatt gtccgcaagtccatatggtgtgaaactgaccaatgacaaggatggtgcagtagttttgtatggtgaagggctgaagtttt tcacggttcacgatgatgagttgcgcgagatgaagatgttgaaaatgaaagcatccaatgacttcgtacaagttcagaag aagtactacatttgcagtaaaggcaaaatacttgtgtacaacgaccgtaggtactacacgcaacatcttcctgttgctgg agacgtatggtatatctgtgccgttgatgatgcaaggctttgctacacgctatacaagggggacaaattgttctgtatca ccttaaagggatctcctgtctttgaatattcgcataaaagattgcttaacacaactggcgttgcagtagacagcaagaaa aacatctatgtctgtgggtatgacacgaaaaatgttcatcaactcagcaaagatggaaagcttctgaagatcgtgctatt caacattccaggaaggccatggtgcattagcttcaacaaaactggcgagaaagttgccatcggttgcccaagaaaggttc tgatttatgaatctaaagactttgccggctga |
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Protein
| Protein ID | pfu_aug2.0_23.1_10124.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_23.1_10124.t1 MLTIVKRYCKIPVYVMIRPRGGDFLYNTTEFEVMQEDIMALQEGGADGFVFGCLKSDGRIEEEMCSEFIHWSKRLPTNHV LVNLIDMNKTLSGSKLCSACARDSEKEVAQSWCLNCCEALCAVCVKCHRKSKATASHKFVDIQNEGTEMSLQSADVFCTE HPSKLLEAYCSDHSKVCCMSCVMLKHRKCNHVGSVEDAAKEKKSSVFTQEIECAFSQMKDDLEVMIEERDENIKAFEGSI EQMKDDANKLFKEISTHIEWLKYRAFDDISALQKKILHEIKDDKQDLQHRISAVKYHLALFHTNVKYASPAQFLIAMEKL SEQKEICEEFTDEKKNGKRTVIVKCRMDKSLSKISKEAKRFLAYRVLRVQASSLKEPELLENITTEGRLSVSGIAFLTND YLLASICGDKCLELWNDQYELVSTIKLSASPYGVKLTNDKDGAVVLYGEGLKFFTVHDDELREMKMLKMKASNDFVQVQK KYYICSKGKILVYNDRRYYTQHLPVAGDVWYICAVDDARLCYTLYKGDKLFCITLKGSPVFEYSHKRLLNTTGVAVDSKK NIYVCGYDTKNVHQLSKDGKLLKIVLFNIPGRPWCISFNKTGEKVAIGCPRKVLIYESKDFAG |
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