Gene
| Gene Model ID | pfu_aug2.0_23.1_10122 |
|---|---|
| Locus | scaffold23.1 : 551400 ... 566805 : - |
| To GenomeBrowser | scaffold23.1:551400..566805 |
| Genes list of scaffold | scaffold23.1 |
| Synonym | pfu_aug1.0_10199.1_53497 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_23.1_10122.t1 | 4 | 1 | EGF_2 | 191 | 195 | 9.0e-07 | 28.9 | 4.3 | 8000.0 | -2.9 |
| pfu_aug2.0_23.1_10122.t1 | 1 | 1 | Ig_3 | 262 | 336 | 1.6e-10 | 41.3 | 2.4e-13 | 4.4e-10 | 39.9 |
| pfu_aug2.0_23.1_10122.t1 | 1 | 1 | I-set | 265 | 350 | 4.8e-15 | 55.1 | 4.7e-18 | 8.7e-15 | 54.3 |
| pfu_aug2.0_23.1_10122.t1 | 1 | 1 | Ig_2 | 265 | 348 | 2.5e-13 | 49.9 | 3.0e-16 | 5.5e-13 | 48.8 |
| pfu_aug2.0_23.1_10122.t1 | 4 | 2 | EGF_2 | 501 | 528 | 9.0e-07 | 28.9 | 3.6e-06 | 0.0067 | 16.5 |
| pfu_aug2.0_23.1_10122.t1 | 4 | 3 | EGF_2 | 533 | 560 | 9.0e-07 | 28.9 | 2.1e-05 | 0.039 | 14.1 |
| pfu_aug2.0_23.1_10122.t1 | 4 | 4 | EGF_2 | 568 | 594 | 9.0e-07 | 28.9 | 8.6e-06 | 0.016 | 15.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_23.1_10122.t1 | gi|390340172|ref|XP_003725182.1| | 0.0 | |
| pfu_aug2.0_23.1_10122.t1 | gi|198422803|ref|XP_002129012.1| | PREDICTED: uncharacterized protein LOC100176485 isoform X2 [Ciona intestinalis] | 0.0 |
| pfu_aug2.0_23.1_10122.t1 | gi|459183014|ref|XP_004227002.1| | PREDICTED: uncharacterized protein LOC100176485 isoform X1 [Ciona intestinalis] | 0.0 |
| pfu_aug2.0_23.1_10122.t1 | gi|196009700|ref|XP_002114715.1| | predicted protein [Trichoplax adhaerens] | 0.0 |
| pfu_aug2.0_23.1_10122.t1 | gi|524883323|ref|XP_005098294.1| | PREDICTED: hemicentin-2-like [Aplysia californica] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_23.1_10122.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_23.1_10122.t1 atgacgatgaggaggacgggagaaggcaaaaatagacacctttgtcatggactgtttgtcaccatcctttgtgtcgtttt gatgcaatcagcattagcagtggcggatccagtgccaccttgggcctggggaaaaattgtagttttgacgaaattgtcaa aaacgagtggagattttaggagtgaattttgggtcaatagggcgggaggaggggtgttagtgtcctttaaattcgccgct gatgtatgtcaccagaatataaaagtggagccaccgatacgggcgggaaatgcacgtaccgccaccccgtgctgtgtacc aaatgattcaaaaatcctccgcgctgcataaaaatcgggatgtgccgatggtagcgaaagtgttctcaagcaacacaatg aaatatctgtatgtcccggaaaatggacgggacacataaggaacgctactcatctgtgttctccaggttggaaagtgtgt tctttcgaggattattccatgcttagggatgtaaggtgggaacatgccacttctttcgagggatgttacgctattaatgc agctcatgatggcgggaaatgcagagaatgccgggaagatttgaatagggatgatctggctggtattgggcgtggctgtc cccaccagaactacggacagacttcctgtatctccgggggtagaattgacgccagttgttgtgttgacgcacactttcaa gaggcgtgccaccaccgtcctggaatcatcacaggcgtcgtctgctgtaaaattccaaccaaaaagccgagaattatagt caaaccccgccagtacatggaggtgaacatgggactcatatttttattgacctgccaggcgtcggggtcacccttacctc gggtcaaatggtacaaagacggacgggaaatcaggagtaacagaagaatccaggctctctcctcaggagatttattagta accctggccaaaccatcagattcggggttatatagttgtgaagtcataaatgaagctggaatggatgttgctagctcaca agttattgtaaaagcacacagctcaggatgtagggacggtagtacagacggactgaacatccaccgtgatgtacacgcct gtacgggcagctgggaggggcacgtaaagaaggcaaggaagaccctgtgtcagagggggtggagggtgtgtagccccagg gacagggattctatacagaaactcacatggctggatatatttgacctcaacggatgctatgcctacaatgctgctaataa aagagggtgtaaaagatgtaccgatggtagaatggcaggggtaggtcgtaattgcggtaggatgcggtattccaagtttt catgtctcgctcaaggtcaggtggatgttttcaagccacaggatcgtaatgagggatgctcgtataaagaaggtgttacc actggagttctctgctgtagaaagaaacataaaagagagaacaaataccagccatttacctgtaagccagagtgtttgaa tggaggaaagtgtgtcagtcataatctatgcagatgtacgtctggatacaagggagccatgtgtcaaaatccggtttgtg atggaggttgtggaaaatatggtcgttgcattcggccgggaaaatgtaaatgtaagaaaggttactctggaaagaattgt ctgaagaagaaacggaagatgtgtaggaggccgtgcttaaacggaggaagatgtaggagggggagatgtaaatgtcctcc atcacactgggggaaaacttgtcaacatttttatgaaactttaatcagaactcatcaaaatcggacagaacggtga |
|
Protein
| Protein ID | pfu_aug2.0_23.1_10122.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_23.1_10122.t1 MTMRRTGEGKNRHLCHGLFVTILCVVLMQSALAVADPVPPWAWGKIVVLTKLSKTSGDFRSEFWVNRAGGGVLVSFKFAA DVCHQNIKVEPPIRAGNARTATPCCVPNDSKILRAAXKSGCADGSESVLKQHNEISVCPGKWTGHIRNATHLCSPGWKVC SFEDYSMLRDVRWEHATSFEGCYAINAAHDGGKCRECREDLNRDDLAGIGRGCPHQNYGQTSCISGGRIDASCCVDAHFQ EACHHRPGIITGVVCCKIPTKKPRIIVKPRQYMEVNMGLIFLLTCQASGSPLPRVKWYKDGREIRSNRRIQALSSGDLLV TLAKPSDSGLYSCEVINEAGMDVASSQVIVKAHSSGCRDGSTDGLNIHRDVHACTGSWEGHVKKARKTLCQRGWRVCSPR DRDSIQKLTWLDIFDLNGCYAYNAANKRGCKRCTDGRMAGVGRNCGRMRYSKFSCLAQGQVDVFKPQDRNEGCSYKEGVT TGVLCCRKKHKRENKYQPFTCKPECLNGGKCVSHNLCRCTSGYKGAMCQNPVCDGGCGKYGRCIRPGKCKCKKGYSGKNC LKKKRKMCRRPCLNGGRCRRGRCKCPPSHWGKTCQHFYETLIRTHQNRTER |
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