Gene
| Gene Model ID | pfu_aug2.0_226.1_20454 |
|---|---|
| Locus | scaffold226.1 : 227583 ... 245242 : + |
| To GenomeBrowser | scaffold226.1:227583..245242 |
| Genes list of scaffold | scaffold226.1 |
| Synonym | pfu_aug1.0_121.1_22012 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_226.1_20454.t1 | 1 | 1 | LMBR1 | 8 | 458 | 0.0 | 375.7 | 0.0 | 0.0 | 369.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_226.1_20454.t1 | gi|676435919|ref|XP_009047713.1| | hypothetical protein LOTGIDRAFT_139400 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_226.1_20454.t1 | gi|524912544|ref|XP_005111119.1| | PREDICTED: protein LMBR1L-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_226.1_20454.t1 | gi|585680317|ref|XP_006819669.1| | PREDICTED: protein LMBR1L-like [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_226.1_20454.t1 | gi|126341090|ref|XP_001364737.1| | PREDICTED: limb region 1 protein homolog isoform X1 [Monodelphis domestica] | 0.0 |
| pfu_aug2.0_226.1_20454.t1 | gi|556997748|ref|XP_006002229.1| | PREDICTED: limb region 1 protein homolog isoform X1 [Latimeria chalumnae] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_226.1_20454.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_226.1_20454.t1 atgaaagccctaccccttatgattttcctgttacttttcattttgttgtacctttgttcgtatgtaacagtatgtcatta caagaagaaatcggatgatgaaatatactcaggtgatgaagatgccattgtgtacaggatagcactatggctatgtacct tcaccctgtcagtgtctgccggtgccatattattactgccgatttccattatatcaaacgaggtgctactgctctatcct aagtcatactacgtcaagtggctcaacagttcacttatcatagcactatggaacaacattttcctggtgtccaatctggc tctcttcatcttcatgccgttcgcctatctattcaccgagtcggagggatttgtcggaagtaaaaaaggagtatgggctc gagtgtatgagacgttaattgtactttttctgatggccatgtttgtgtttggtctggcctgggtagcttctgcaatattt gatgatgacacacacagcaaacaaacattgtttgatatatggacattttaccttccctatttgtactcgtgtgtttcatt ccttggcgttattgttcttatgttatgtacacccaatggttttgcacacatgttcaccgtaatgggacagctaatcaaaa aacccaattttttatcacaaaatgaggaggatgaatggttgacagtacagctgaaaggagaaagtctacgtaggaggatc aataataaacatatggtttcacagccaattgccaatggacaatactcactagaagaactgaacaaaatgttaaaagaaaa ccaggagacaaaagaggacctagagaagagaagaaaggtgtctccatggagaagaaattgtgtctacccacttgttatgt tgttattactttttttaacagtattatgtgtattgatggttgctcacaatttctttgaactccttgtcggcatcaaagct ttacctgttggagcaaaggagacagtgttagggatagcttctttgtcagccctgggatccataggtgctgtcctggaaat agtccttattttgtatcctttattatatactgaagattatacttacagcacaaaaaaagtacaagcggcttatacttaca gcacaaaaaaagtacaagcggcttatacttacagcacaaaaaagcccataccgcaagacacttccatggtcaaggtcata gggaactgtattgtgttgttgatactgagttctgctctccctgtcatgtcaaggacattaggtctaaccaattttgactt gattggtaatttcggtagcatggactggctcggtaacttctatatcatcatgctatgtaatataatctttgctggactga caatcctatgcttgacaacaaaattcacagccaccgtcaggagtgaaatctatgagagactcgctacggcatttcagaac tggatcagtggtttgcggtcacgggagtcgaggtcatactctctgaatatcagcactacaatgaatggaggactgaagga agattga |
|
Protein
| Protein ID | pfu_aug2.0_226.1_20454.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_226.1_20454.t1 MKALPLMIFLLLFILLYLCSYVTVCHYKKKSDDEIYSGDEDAIVYRIALWLCTFTLSVSAGAILLLPISIISNEVLLLYP KSYYVKWLNSSLIIALWNNIFLVSNLALFIFMPFAYLFTESEGFVGSKKGVWARVYETLIVLFLMAMFVFGLAWVASAIF DDDTHSKQTLFDIWTFYLPYLYSCVSFLGVIVLMLCTPNGFAHMFTVMGQLIKKPNFLSQNEEDEWLTVQLKGESLRRRI NNKHMVSQPIANGQYSLEELNKMLKENQETKEDLEKRRKVSPWRRNCVYPLVMLLLLFLTVLCVLMVAHNFFELLVGIKA LPVGAKETVLGIASLSALGSIGAVLEIVLILYPLLYTEDYTYSTKKVQAAYTYSTKKVQAAYTYSTKKPIPQDTSMVKVI GNCIVLLILSSALPVMSRTLGLTNFDLIGNFGSMDWLGNFYIIMLCNIIFAGLTILCLTTKFTATVRSEIYERLATAFQN WISGLRSRESRSYSLNISTTMNGGLKED |
|