Gene
| Gene Model ID | pfu_aug2.0_2142.1_08757 |
|---|---|
| Locus | scaffold2142.1 : 94573 ... 100765 : - |
| To GenomeBrowser | scaffold2142.1:94573..100765 |
| Genes list of scaffold | scaffold2142.1 |
| Synonym | pfu_aug1.0_30858.1_12033 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_2142.1_08757.t1 | 1 | 1 | Formyl_trans_N | 7 | 89 | 1.4e-19 | 70.3 | 3.2e-23 | 2.4e-19 | 69.5 |
| pfu_aug2.0_2142.1_08757.t1 | 1 | 1 | Formyl_trans_C | 113 | 223 | 2.3e-12 | 46.8 | 5.0e-16 | 3.7e-12 | 46.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_2142.1_08757.t1 | gi|675883360|ref|XP_009027182.1| | hypothetical protein HELRODRAFT_68612 [Helobdella robusta] | 0.0 |
| pfu_aug2.0_2142.1_08757.t1 | gi|157423296|gb|AAI53526.1| | Zgc:152651 protein [Danio rerio] | 0.0 |
| pfu_aug2.0_2142.1_08757.t1 | gi|158749622|ref|NP_001071010.2| | methionyl-tRNA formyltransferase, mitochondrial [Danio rerio] | 0.0 |
| pfu_aug2.0_2142.1_08757.t1 | gi|584019023|ref|XP_006804220.1| | PREDICTED: methionyl-tRNA formyltransferase, mitochondrial-like [Neolamprologus brichardi] | 0.0 |
| pfu_aug2.0_2142.1_08757.t1 | gi|542262642|ref|XP_005466128.1| | PREDICTED: methionyl-tRNA formyltransferase, mitochondrial-like isoform X2 [Oreochromis niloticus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_2142.1_08757.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2142.1_08757.t1 atgcgcaagttttctttatcttttaatagtggaatcctgaatgtacatcccagtctgttgccgaggtggagaggagcggc tccgttggttcatacaattctaaatggtgacaaggaaactggcatctcgatcatggaaatcagacctaaatactttgata ttggtcctttattactgaaagtgccttttaaagttccagaaaatgttactacatctgaactaagccaaaacatggcaaat aaaggagctcaaattcttatgcatacattgcctcatttaccacagctggaaaaatcacaagtagagcaggatacatttgg agttagatgggctcacaagattacgaaggagatgacgtttgttgactgggaaaaccagacgtgtgatagcattgatcgac aatacagagcacttaatgaaatgatgccgttacgaactaatctgaaaaatctggagatcagacttctagcaaagagaatc aatgtaaacgatacagacacagataattttgtgaaacaattgtatggctgtcctggtgatcatgttccacctggatctcc attatattgtaagaaaaagaagactctcctagtcagatgtaaggatggatgggttggatttgataaagtcactttcaaga agacattatcagcgatggacttcgctagcattctcaagaaaaactataaaggagaagtgtttacgtctcctccgcaagtg aaaaaggaagatgtaaaacaaactgtgcagaagtcacaatgtcatcttcatcagattagggaatcttgtgtactggacgc ggcaaaacgtagacaacgttcttctcattttattttggatttcttaggatctaggagctga |
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Protein
| Protein ID | pfu_aug2.0_2142.1_08757.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2142.1_08757.t1 MRKFSLSFNSGILNVHPSLLPRWRGAAPLVHTILNGDKETGISIMEIRPKYFDIGPLLLKVPFKVPENVTTSELSQNMAN KGAQILMHTLPHLPQLEKSQVEQDTFGVRWAHKITKEMTFVDWENQTCDSIDRQYRALNEMMPLRTNLKNLEIRLLAKRI NVNDTDTDNFVKQLYGCPGDHVPPGSPLYCKKKKTLLVRCKDGWVGFDKVTFKKTLSAMDFASILKKNYKGEVFTSPPQV KKEDVKQTVQKSQCHLHQIRESCVLDAAKRRQRSSHFILDFLGSRS |
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