Gene
| Gene Model ID | pfu_aug2.0_206.1_20427 |
|---|---|
| Locus | scaffold206.1 : 223615 ... 239147 : + |
| To GenomeBrowser | scaffold206.1:223615..239147 |
| Genes list of scaffold | scaffold206.1 |
| Synonym | pfu_aug1.0_804.1_58249 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_206.1_20427.t1 | 2 | 1 | Homeobox | 66 | 85 | 4.3e-07 | 29.4 | 5.4e-07 | 0.004 | 16.7 |
| pfu_aug2.0_206.1_20427.t1 | 2 | 2 | Homeobox | 93 | 105 | 4.3e-07 | 29.4 | 6.5e-07 | 0.0048 | 16.4 |
| pfu_aug2.0_206.1_20427.t1 | 1 | 1 | OAR | 246 | 263 | 5.6e-08 | 32.0 | 1.7e-11 | 1.3e-07 | 30.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_206.1_20427.t1 | gi|676457981|ref|XP_009054827.1| | hypothetical protein LOTGIDRAFT_150185 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_206.1_20427.t1 | gi|72004990|ref|XP_784599.1| | PREDICTED: homeobox protein orthopedia isoform X2 [Strongylocentrotus purpuratus] | 2.0e-40 |
| pfu_aug2.0_206.1_20427.t1 | gi|524880500|ref|XP_005096913.1| | PREDICTED: homeobox protein orthopedia-like [Aplysia californica] | 1.0e-36 |
| pfu_aug2.0_206.1_20427.t1 | gi|259013299|ref|NP_001158374.1| | orthopedia homeobox [Saccoglossus kowalevskii] | 2.0e-36 |
| pfu_aug2.0_206.1_20427.t1 | gi|632974273|ref|XP_007903581.1| | PREDICTED: homeobox protein orthopedia [Callorhinchus milii] | 3.0e-36 |
Transcript
| Transcript ID | pfu_aug2.0_206.1_20427.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_206.1_20427.t1 atggatatgatttctaatttacaattaaatgcttctgatggtctatctggaacctccatgtccggcagctgtccagttaa agctgaccttggttcccccggacacggtgtccacaaggatctccagatcagccaaaataaggatcaagaaagtggagata actctattggggactctgacaagccctccaagcagaagcgtcaccggacaagatttacccctgcacaacttaacgaattg gagcgcagtttcgattaccgttttcactgttcctttcaggtctggttccaaaataggcgtgccaaatggaagaaaaggaa gaagacaaccaatgtgtttcgtacccccggggccttattaccctcccctggtttacccacgttcggtacaatgaacgacc cactctgttcgtttcatccatcggacacacggtggactgcaatgtcaggcacgatgaacacaaatcccctggcgctcacg gcctcgttaccgcgtcaaggtcagctgacccaatcctttggatcacaggtagccctcagtggattgagtgacgccatgaa cgcgtcactaggaagcaacataccgatgtctaatgcaggggcgtcaatctacaatcctggatatggaatgcagatgacat cggccagctgttcctcacctttgtccggaaattcgaattccccgccgcttacctccgcccagatgacatgcgggatgcaa gagataggcgaagcctggagggggacaagcattgcctcactgagacgtaaagccctggaacacacggctacattgacggg gtttcgatga |
|
Protein
| Protein ID | pfu_aug2.0_206.1_20427.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_206.1_20427.t1 MDMISNLQLNASDGLSGTSMSGSCPVKADLGSPGHGVHKDLQISQNKDQESGDNSIGDSDKPSKQKRHRTRFTPAQLNEL ERSFDYRFHCSFQVWFQNRRAKWKKRKKTTNVFRTPGALLPSPGLPTFGTMNDPLCSFHPSDTRWTAMSGTMNTNPLALT ASLPRQGQLTQSFGSQVALSGLSDAMNASLGSNIPMSNAGASIYNPGYGMQMTSASCSSPLSGNSNSPPLTSAQMTCGMQ EIGEAWRGTSIASLRRKALEHTATLTGFR |
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