Gene
| Gene Model ID | pfu_aug2.0_206.1_20419 |
|---|---|
| Locus | scaffold206.1 : 66806 ... 71466 : + |
| To GenomeBrowser | scaffold206.1:66806..71466 |
| Genes list of scaffold | scaffold206.1 |
| Synonym | pfu_aug1.0_19369.1_18632 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| macrophage migration inhibitory factor | GO:0001819 GO:0001934 GO:0002684 GO:0002694 GO:0005126 GO:0007166 GO:0007548 GO:0007569 GO:0008284 GO:0009605 GO:0010468 GO:0010605 GO:0016860 GO:0018193 GO:0019752 GO:0030330 GO:0031982 GO:0033036 GO:0042221 GO:0043066 GO:0043227 GO:0043410 GO:0044249 GO:0044421 GO:0044424 GO:0044702 GO:0048731 GO:0051047 GO:0071702 GO:1901576 GO:1901797 GO:2001021 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_206.1_20419.t1 | 1 | 1 | MIF | 11 | 109 | 7.7e-15 | 54.9 | 1.2e-18 | 9.0e-15 | 54.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_206.1_20419.t1 | gi|676440715|ref|XP_009049265.1| | hypothetical protein LOTGIDRAFT_158306 [Lottia gigantea] | 3.0e-21 |
| pfu_aug2.0_206.1_20419.t1 | gi|395862177|ref|XP_003803339.1| | PREDICTED: macrophage migration inhibitory factor [Otolemur garnettii] | 9.0e-09 |
| pfu_aug2.0_206.1_20419.t1 | gi|5739517|gb|AAD50507.1|AF176246_1 | macrophage migration inhibitory factor, partial [Sus scrofa] | 4.0e-08 |
| pfu_aug2.0_206.1_20419.t1 | gi|116175251|ref|NP_001070681.1| | macrophage migration inhibitory factor [Sus scrofa] | 4.0e-08 |
| pfu_aug2.0_206.1_20419.t1 | gi|262204902|dbj|BAI48031.1| | macrophage migration inhibitory factor [Sus scrofa] | 4.0e-08 |
Transcript
| Transcript ID | pfu_aug2.0_206.1_20419.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_206.1_20419.t1 atgaacacttctagcatcagcgtggctgcggtgatacggactaatgtgccacgacagtcaattagaaaagattttatgag caaatttacagattatttatgtgaatcttttaacaccgatataaagcatacaaacgttgagattcatgctgatgtactga tgatgagaggagggctatcaacgcctatgatgaacatcagtctataccataacacaaacgttatcagtcagacgaccaag gtcaataacgctgaacctatagccaagttcatggcagaagaaatgaagattcccatagacagggtactagtgttgttttt tgataccaggaagtgtacgtag |
|
Protein
| Protein ID | pfu_aug2.0_206.1_20419.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_206.1_20419.t1 MNTSSISVAAVIRTNVPRQSIRKDFMSKFTDYLCESFNTDIKHTNVEIHADVLMMRGGLSTPMMNISLYHNTNVISQTTK VNNAEPIAKFMAEEMKIPIDRVLVLFFDTRKCT |
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