Gene
| Gene Model ID | pfu_aug2.0_1914.1_15308 |
|---|---|
| Locus | scaffold1914.1 : 56836 ... 66142 : + |
| To GenomeBrowser | scaffold1914.1:56836..66142 |
| Genes list of scaffold | scaffold1914.1 |
| Synonym | pfu_aug1.0_60927.1_34663 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| dna polymerase kappa | GO:0006259 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1914.1_15308.t1 | 1 | 1 | IMS | 2 | 196 | 4.0e-21 | 75.3 | 4.2e-24 | 9.0e-21 | 74.2 |
| pfu_aug2.0_1914.1_15308.t1 | 1 | 1 | IMS_HHH | 211 | 241 | 3.5e-07 | 29.8 | 4.3e-10 | 9.0e-07 | 28.5 |
| pfu_aug2.0_1914.1_15308.t1 | 3 | 1 | IMS_C | 283 | 387 | 1.3e-20 | 73.6 | 1.2e-20 | 2.6e-17 | 62.9 |
| pfu_aug2.0_1914.1_15308.t1 | 3 | 2 | IMS_C | 529 | 570 | 1.3e-20 | 73.6 | 0.0013 | 2.7 | 7.9 |
| pfu_aug2.0_1914.1_15308.t1 | 3 | 3 | IMS_C | 778 | 806 | 1.3e-20 | 73.6 | 1.4 | 3100.0 | -2.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1914.1_15308.t1 | gi|676477514|ref|XP_009061133.1| | hypothetical protein LOTGIDRAFT_126473 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_1914.1_15308.t1 | gi|524866806|ref|XP_005090219.1| | PREDICTED: DNA polymerase kappa-like isoform X1 [Aplysia californica] | 0.0 |
| pfu_aug2.0_1914.1_15308.t1 | gi|560927918|ref|XP_006190121.1| | PREDICTED: DNA polymerase kappa [Camelus ferus] | 0.0 |
| pfu_aug2.0_1914.1_15308.t1 | gi|589946266|ref|XP_006985813.1| | PREDICTED: DNA polymerase kappa [Peromyscus maniculatus bairdii] | 0.0 |
| pfu_aug2.0_1914.1_15308.t1 | gi|674055696|ref|XP_008834298.1| | PREDICTED: DNA polymerase kappa [Nannospalax galili] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_1914.1_15308.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1914.1_15308.t1 atgccaggctttattggaaagaaactatgtccagaacttgttattgtgccattaaactttgataaatatacagctgttag taaacaggtacgagacatcctatcagactacgactccagtttttgtcccatgagtcttgatgaagcttacctcgacatga cagatcatgtgatcaaacggtcgcgtttttctgacaaggagaggacttacctgctgcggaaagttgacaagcatcaaaac gtgtgtttatgtgatctgaatgaaactatatgggaagaggaaattcaaaaaagtgaaaacaattgtaaagaaaacaatgt ttcatcattaaattattgtgatacaaaggacagaaatagggtcgcaaaaacgaattattctgatactgacggtccaaatg tactgaggagtttagacacggtatgtgtgatatgcggtaaaccactaccagattttgaaaagaagacttttggatttaac gtagaggatgctgtccgtgaaatgcgtagtaggatcgagcagagaacgacattgactgctagtgcaggtatagcgccaaa catgatgttggccaagatctgctcggatcggaataaaccaaacggacagtatattattcagaataataaggatgctgtca tggagtttatcaaagatttacctataagaaagataagtggcattggcaaagtgacagaaaaaatgctgaatgcccttgga attcagacaactacagatctgtaccaccagagggcgctgctgtttcatctgtattctcagatttcttttcattacttcat gagaatttgtcttggaatcggatctacaacagttgaaagggaaagcggtaggaaaagcatgagtacggaaagaacctttc gtgagatcagcacgcccatagagctttatgcaaaatgtcgtgagctaagtgaagcactggcagaggaccttaaggaagaa gaacttaagggcaagactgtgggaatcaaagtaaagactgtgaagtttgaggtgaagacacgggtacagacattaccgga gtacacctgtgatgtagacacaatattcactgctgctagggaccttctgaggatagaaatacaaaatgtggctccacaac ctctcagactcaggcttatgggagtcagaatgtcaggtctcttacatcaaacaatgtgtaagaaacaacaaaacaccttg acctccctcctgaagaaaatggaatctacccagcaaagtgtgtcttcatccaaatcttcagctacaagttttgtgaaaat ggagggaataacagagcaaccttctgttaactgtgatgaaaacatttgtacttatgcaaacgaggaaagatctttaatcg aaaagaattgtttaagtttacctgaattacccgaccaggacgcctattctgaaaatgatatgtgttacaacgaggtgaac cataacaaggagtatcataataaattgattaacgataaaacacaagatgagataggcagtaacatagatagttgtggaaa tccagatcaagaggagaacacaagtgatgacccggttacatcctctacatataaggatacagtaaagcaactagatcaga tagatgacacgatattcactgctgctagggaccttctgaggatagaaatacaaaatgtggctccacaacctctcagactc aggcttatgggagtcagaatgtcaggtctcttacatcaaacaatgtgtaagaaacaacaaaacaccctgacctccctcct gaagaaaatggaatctactcagcaaagcgtgtcttcatccaaatcttcagctacaagttttgtgaaaatggagggaataa cagagcaaccttctgttaactgtgatgaaaacatttgtacttatgcaaacgaggaaagatctttaatggaaaagaattgt ttaagtttacctgaattaccagaccaggacgccttttctgaaaatgttatgtgttacagcgaggtgaaccattacaagga gtatcataataaattgatgaacgataaaacacaagatgagatagacagtaacatagatagttgtggaaatccagatcaag aggatatctcaagtgatgacccagttacatcctcttcacataaggattttgtaaagcaactagatcagatagatgattta gagaaatgtgatactaaagagaagagtaatttagaagtacatgtaagtaaggagacccctggtacgtctacagacagtgt aggcagttatacttgtcctgtatgttgtggtatactggaatgtagcagtctcagccagtttaacgcccatatcgatgttt gtcttaataagggtatagtgatggaatgctctcgctatgtaccaccaacagacaaagtaaactcaaaatctaccttaaag aaagcagctacaaagacaacgaaatctgttggttcaaaacaaactgtgaaaagtgtcattggtaagagacaagagtcagc cctaaagatagatacaataggacaagagtctactcagaaagtaactccgactcagaaatttaatacaactcagaaagcaa ctcctccaactcaaagggtaactccaacaaaaggtgactctacatcaacaaaggatgatctgtcactggaaaaggacact atggaaaagctggtttgtcctgtgtgttttatggagcagagtcaggctgacttggacagctttaatcaacatgtagattc ctgtctgaataaagacgccataacacaaatactgactgagcagaaatcatggcaaaaacctgcagctaaaagatctctaa gtagtcctagtcccaaaagctccaagagaagaagacaaagtagtggtaccatgaagtgtggtaatattgtgtcattcttc aaacatgccggatga |
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Protein
| Protein ID | pfu_aug2.0_1914.1_15308.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1914.1_15308.t1 MPGFIGKKLCPELVIVPLNFDKYTAVSKQVRDILSDYDSSFCPMSLDEAYLDMTDHVIKRSRFSDKERTYLLRKVDKHQN VCLCDLNETIWEEEIQKSENNCKENNVSSLNYCDTKDRNRVAKTNYSDTDGPNVLRSLDTVCVICGKPLPDFEKKTFGFN VEDAVREMRSRIEQRTTLTASAGIAPNMMLAKICSDRNKPNGQYIIQNNKDAVMEFIKDLPIRKISGIGKVTEKMLNALG IQTTTDLYHQRALLFHLYSQISFHYFMRICLGIGSTTVERESGRKSMSTERTFREISTPIELYAKCRELSEALAEDLKEE ELKGKTVGIKVKTVKFEVKTRVQTLPEYTCDVDTIFTAARDLLRIEIQNVAPQPLRLRLMGVRMSGLLHQTMCKKQQNTL TSLLKKMESTQQSVSSSKSSATSFVKMEGITEQPSVNCDENICTYANEERSLIEKNCLSLPELPDQDAYSENDMCYNEVN HNKEYHNKLINDKTQDEIGSNIDSCGNPDQEENTSDDPVTSSTYKDTVKQLDQIDDTIFTAARDLLRIEIQNVAPQPLRL RLMGVRMSGLLHQTMCKKQQNTLTSLLKKMESTQQSVSSSKSSATSFVKMEGITEQPSVNCDENICTYANEERSLMEKNC LSLPELPDQDAFSENVMCYSEVNHYKEYHNKLMNDKTQDEIDSNIDSCGNPDQEDISSDDPVTSSSHKDFVKQLDQIDDL EKCDTKEKSNLEVHVSKETPGTSTDSVGSYTCPVCCGILECSSLSQFNAHIDVCLNKGIVMECSRYVPPTDKVNSKSTLK KAATKTTKSVGSKQTVKSVIGKRQESALKIDTIGQESTQKVTPTQKFNTTQKATPPTQRVTPTKGDSTSTKDDLSLEKDT MEKLVCPVCFMEQSQADLDSFNQHVDSCLNKDAITQILTEQKSWQKPAAKRSLSSPSPKSSKRRRQSSGTMKCGNIVSFF KHAG |
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