Gene
| Gene Model ID | pfu_aug2.0_1912.1_08641 |
|---|---|
| Locus | scaffold1912.1 : 26866 ... 28785 : + |
| To GenomeBrowser | scaffold1912.1:26866..28785 |
| Genes list of scaffold | scaffold1912.1 |
| Synonym | NA |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1912.1_08641.t1 | 6 | 1 | zf-C2H2_4 | 145 | 153 | 4.6e-10 | 39.1 | 2.7 | 2400.0 | -0.7 |
| pfu_aug2.0_1912.1_08641.t1 | 6 | 1 | zf-C2H2 | 146 | 152 | 1.3e-10 | 41.0 | 7.7 | 6700.0 | -2.2 |
| pfu_aug2.0_1912.1_08641.t1 | 6 | 1 | zf-H2C2_2 | 171 | 182 | 2.3e-10 | 40.2 | 0.0001 | 0.089 | 13.1 |
| pfu_aug2.0_1912.1_08641.t1 | 6 | 2 | zf-C2H2 | 173 | 185 | 1.3e-10 | 41.0 | 0.16 | 140.0 | 3.1 |
| pfu_aug2.0_1912.1_08641.t1 | 6 | 2 | zf-C2H2_4 | 173 | 197 | 4.6e-10 | 39.1 | 9.2e-07 | 0.0008 | 19.5 |
| pfu_aug2.0_1912.1_08641.t1 | 6 | 2 | zf-H2C2_2 | 191 | 212 | 2.3e-10 | 40.2 | 0.014 | 12.0 | 6.3 |
| pfu_aug2.0_1912.1_08641.t1 | 6 | 3 | zf-C2H2_4 | 202 | 223 | 4.6e-10 | 39.1 | 0.00037 | 0.32 | 11.4 |
| pfu_aug2.0_1912.1_08641.t1 | 6 | 3 | zf-C2H2 | 203 | 223 | 1.3e-10 | 41.0 | 1.9e-05 | 0.017 | 15.4 |
| pfu_aug2.0_1912.1_08641.t1 | 6 | 3 | zf-H2C2_2 | 218 | 237 | 2.3e-10 | 40.2 | 0.025 | 22.0 | 5.5 |
| pfu_aug2.0_1912.1_08641.t1 | 6 | 4 | zf-C2H2 | 232 | 239 | 1.3e-10 | 41.0 | 0.87 | 760.0 | 0.8 |
| pfu_aug2.0_1912.1_08641.t1 | 6 | 4 | zf-C2H2_4 | 232 | 239 | 4.6e-10 | 39.1 | 3.0 | 2600.0 | -0.9 |
| pfu_aug2.0_1912.1_08641.t1 | 6 | 4 | zf-H2C2_2 | 251 | 268 | 2.3e-10 | 40.2 | 0.00041 | 0.36 | 11.2 |
| pfu_aug2.0_1912.1_08641.t1 | 6 | 5 | zf-C2H2 | 259 | 281 | 1.3e-10 | 41.0 | 1.8e-06 | 0.0016 | 18.6 |
| pfu_aug2.0_1912.1_08641.t1 | 6 | 5 | zf-C2H2_4 | 259 | 281 | 4.6e-10 | 39.1 | 0.00023 | 0.2 | 12.0 |
| pfu_aug2.0_1912.1_08641.t1 | 6 | 5 | zf-H2C2_2 | 273 | 297 | 2.3e-10 | 40.2 | 1.5e-07 | 0.00013 | 22.0 |
| pfu_aug2.0_1912.1_08641.t1 | 6 | 6 | zf-C2H2 | 287 | 309 | 1.3e-10 | 41.0 | 7.1e-08 | 6.2e-05 | 23.1 |
| pfu_aug2.0_1912.1_08641.t1 | 6 | 6 | zf-C2H2_4 | 287 | 309 | 4.6e-10 | 39.1 | 8.1e-06 | 0.0071 | 16.6 |
| pfu_aug2.0_1912.1_08641.t1 | 6 | 6 | zf-H2C2_2 | 301 | 314 | 2.3e-10 | 40.2 | 0.15 | 130.0 | 3.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1912.1_08641.t1 | gi|241997568|ref|XP_002433433.1| | zinc finger protein, putative [Ixodes scapularis] | 4.0e-18 |
| pfu_aug2.0_1912.1_08641.t1 | gi|219841930|gb|AAI45604.1| | Zfp408 protein [Mus musculus] | 8.0e-18 |
| pfu_aug2.0_1912.1_08641.t1 | gi|658902907|ref|XP_008434215.1| | PREDICTED: gastrula zinc finger protein XlCGF57.1-like isoform X1 [Poecilia reticulata] | 4.0e-17 |
| pfu_aug2.0_1912.1_08641.t1 | gi|658902909|ref|XP_008434216.1| | PREDICTED: gastrula zinc finger protein XlCGF26.1-like isoform X2 [Poecilia reticulata] | 4.0e-17 |
| pfu_aug2.0_1912.1_08641.t1 | gi|585721637|ref|XP_006902905.1| | PREDICTED: zinc finger protein 160-like [Elephantulus edwardii] | 1.0e-16 |
Transcript
| Transcript ID | pfu_aug2.0_1912.1_08641.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1912.1_08641.t1 atggatgatggaatgcaaattaaagagaataaaacgaggcatctgtcaacatggccaacaacaaaaagaattttgaataa tgacaaatattttagcgaatcagaaaacgacgtatgtttggaaaagaaattttcaaatgaaacaggaaatcgcagggaac aaaatctaaatcgttcccatcacatagatgtaatcagaggagaagacaaaatatctgacattggacgacctgcatcgcag gcactgacacaaccatctactgttactgaaacatcaaagcaaatcaccatcacatctgaagcttttgctgattattctaa taccaccggctcccgttcactgttacctagtactcctatttcgcttatacgttttcttacgtctcaacttgaaaccttca atatgaaagaagacaagagtgaaaacaccgccgaagaatcgttacatagacatttagcaatagcaataacacacaaagat ctgacaccgatagagatggactttgatgataaagatttttgttgtccccattgtggtagaacattccccaaaaatagaaa gtggcattttgacactcatttacttacacattctgaccctgtggcgtgtccaatatgtaaacaagtttgcaaaaacaagg ccacatatatacgccacgccaggaaacacagagatccaatttttacctctaagaaatgtgggaaaacatacgaggatgag cagcaatactctcatgacgagcactatcataaagggacagaaaatgaaagaaaatttaaatgcgaaatttgtgacagagc tttcatgctcaagaatcatttggtaacccatgtaaggatccattctactaatcgtagctataaatgtgactattgtggaa agacatataaaatgaattatagtttaaaaaaacatttaaaaaattgtccgaaggagaagaacatatttgcctttatatac attcctccagaagtagtgactaaaccaaaactgcctattcaaatcttgccaaaagtgtcataa |
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Protein
| Protein ID | pfu_aug2.0_1912.1_08641.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1912.1_08641.t1 MDDGMQIKENKTRHLSTWPTTKRILNNDKYFSESENDVCLEKKFSNETGNRREQNLNRSHHIDVIRGEDKISDIGRPASQ ALTQPSTVTETSKQITITSEAFADYSNTTGSRSLLPSTPISLIRFLTSQLETFNMKEDKSENTAEESLHRHLAIAITHKD LTPIEMDFDDKDFCCPHCGRTFPKNRKWHFDTHLLTHSDPVACPICKQVCKNKATYIRHARKHRDPIFTSKKCGKTYEDE QQYSHDEHYHKGTENERKFKCEICDRAFMLKNHLVTHVRIHSTNRSYKCDYCGKTYKMNYSLKKHLKNCPKEKNIFAFIY IPPEVVTKPKLPIQILPKVS |
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