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OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug2.0_1871.1_05284
Locus scaffold1871.1 : 7076 ... 34749 : +
To GenomeBrowser scaffold1871.1:7076..34749
Genes list of scaffold scaffold1871.1
Synonym pfu_aug1.0_1080.1_00599

Manual annotation
Annotation by Blast2GO
Annotation GO
peroxisome biogenesis factor 6 GO:0005488

Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug2.0_1871.1_05284.t1 4 1 NACHT 128 213 1.4e-08 34.5 0.089 25.0 4.4
pfu_aug2.0_1871.1_05284.t1 5 1 AAA_16 701 749 1.7e-14 54.2 8.4e-06 0.0024 17.8
pfu_aug2.0_1871.1_05284.t1 3 1 RuvB_N 711 743 6.4e-12 45.0 0.0067 1.9 7.4
pfu_aug2.0_1871.1_05284.t1 3 1 ResIII 714 743 2.5e-06 27.4 0.05 14.0 5.4
pfu_aug2.0_1871.1_05284.t1 3 1 AAA_5 716 749 4.0e-12 46.0 8.5e-06 0.0024 17.5
pfu_aug2.0_1871.1_05284.t1 3 1 AAA_19 716 738 9.9e-10 38.0 0.011 3.2 7.5
pfu_aug2.0_1871.1_05284.t1 3 1 IstB_IS21 716 735 2.4e-09 36.8 0.33 95.0 2.3
pfu_aug2.0_1871.1_05284.t1 3 1 Mg_chelatase 716 731 3.8e-09 36.0 0.36 100.0 1.9
pfu_aug2.0_1871.1_05284.t1 3 1 AAA_2 716 740 9.4e-07 28.8 0.46 130.0 2.3
pfu_aug2.0_1871.1_05284.t1 3 1 Zeta_toxin 716 748 6.7e-06 25.3 0.025 7.0 5.6
pfu_aug2.0_1871.1_05284.t1 3 1 TIP49 716 742 8.1e-06 24.7 0.8 230.0 0.2
pfu_aug2.0_1871.1_05284.t1 3 1 AAA 717 840 0.0 245.9 8.6e-17 2.4e-14 53.6
pfu_aug2.0_1871.1_05284.t1 4 1 AAA_22 717 772 3.7e-14 52.9 1.3e-05 0.0038 17.3
pfu_aug2.0_1871.1_05284.t1 3 1 AAA_17 717 761 2.5e-13 50.8 1.3e-05 0.0036 18.0
pfu_aug2.0_1871.1_05284.t1 3 1 RNA_helicase 717 742 2.9e-11 43.4 0.001 0.3 11.2
pfu_aug2.0_1871.1_05284.t1 4 1 AAA_25 717 737 2.9e-10 39.8 0.054 15.0 4.8
pfu_aug2.0_1871.1_05284.t1 3 1 AAA_33 717 811 1.5e-09 37.8 0.0012 0.35 10.7
pfu_aug2.0_1871.1_05284.t1 3 1 AAA_14 717 824 3.8e-09 36.5 3.5e-06 0.001 19.0
pfu_aug2.0_1871.1_05284.t1 4 1 AAA_28 717 741 1.2e-08 35.1 0.001 0.29 11.0
pfu_aug2.0_1871.1_05284.t1 4 2 NACHT 717 738 1.4e-08 34.5 0.055 16.0 5.1
pfu_aug2.0_1871.1_05284.t1 3 1 AAA_18 717 746 3.0e-07 30.8 0.005 1.4 9.2
pfu_aug2.0_1871.1_05284.t1 3 1 AAA_3 717 747 9.6e-07 28.4 0.13 37.0 3.9
pfu_aug2.0_1871.1_05284.t1 3 1 AAA_24 717 738 1.9e-06 27.6 0.054 15.0 5.0
pfu_aug2.0_1871.1_05284.t1 5 2 AAA_16 754 821 1.7e-14 54.2 0.76 220.0 1.7
pfu_aug2.0_1871.1_05284.t1 4 2 AAA_28 769 823 1.2e-08 35.1 0.4 110.0 2.6
pfu_aug2.0_1871.1_05284.t1 3 2 ResIII 938 993 2.5e-06 27.4 0.0024 0.67 9.7
pfu_aug2.0_1871.1_05284.t1 4 2 AAA_25 949 987 2.9e-10 39.8 4.7e-05 0.014 14.8
pfu_aug2.0_1871.1_05284.t1 5 3 AAA_16 957 987 1.7e-14 54.2 0.00045 0.13 12.2
pfu_aug2.0_1871.1_05284.t1 2 1 Parvo_NS1 961 986 5.7e-08 31.9 3.1e-05 0.0089 14.9
pfu_aug2.0_1871.1_05284.t1 3 2 IstB_IS21 962 985 2.4e-09 36.8 4.6e-05 0.013 14.9
pfu_aug2.0_1871.1_05284.t1 3 2 AAA_19 963 983 9.9e-10 38.0 0.00027 0.078 12.7
pfu_aug2.0_1871.1_05284.t1 4 2 AAA_22 964 985 3.7e-14 52.9 0.00032 0.09 12.9
pfu_aug2.0_1871.1_05284.t1 3 2 Mg_chelatase 964 983 3.8e-09 36.0 2.5e-05 0.0071 15.5
pfu_aug2.0_1871.1_05284.t1 3 2 TIP49 964 987 8.1e-06 24.7 0.0041 1.2 7.8
pfu_aug2.0_1871.1_05284.t1 3 2 AAA 965 997 0.0 245.9 1.2e-10 3.3e-08 33.8
pfu_aug2.0_1871.1_05284.t1 3 2 AAA_5 965 990 4.0e-12 46.0 0.00039 0.11 12.2
pfu_aug2.0_1871.1_05284.t1 3 2 RuvB_N 965 989 6.4e-12 45.0 5.2e-05 0.015 14.3
pfu_aug2.0_1871.1_05284.t1 3 2 AAA_14 965 986 3.8e-09 36.5 0.45 130.0 2.4
pfu_aug2.0_1871.1_05284.t1 3 2 AAA_2 965 994 9.4e-07 28.8 0.017 4.8 7.0
pfu_aug2.0_1871.1_05284.t1 3 2 Zeta_toxin 965 993 6.7e-06 25.3 0.013 3.7 6.5
pfu_aug2.0_1871.1_05284.t1 3 2 AAA_17 966 990 2.5e-13 50.8 0.00051 0.14 12.9
pfu_aug2.0_1871.1_05284.t1 3 2 RNA_helicase 966 987 2.9e-11 43.4 0.0006 0.17 12.0
pfu_aug2.0_1871.1_05284.t1 3 2 AAA_33 966 994 1.5e-09 37.8 0.0012 0.36 10.7
pfu_aug2.0_1871.1_05284.t1 4 3 NACHT 966 985 1.4e-08 34.5 0.0058 1.6 8.3
pfu_aug2.0_1871.1_05284.t1 3 2 AAA_3 966 998 9.6e-07 28.4 0.00038 0.11 12.1
pfu_aug2.0_1871.1_05284.t1 3 2 AAA_24 966 982 1.9e-06 27.6 0.0016 0.46 10.0
pfu_aug2.0_1871.1_05284.t1 4 3 AAA_28 967 984 1.2e-08 35.1 0.016 4.7 7.1
pfu_aug2.0_1871.1_05284.t1 3 2 AAA_18 967 986 3.0e-07 30.8 0.016 4.5 7.5
pfu_aug2.0_1871.1_05284.t1 5 4 AAA_16 1008 1044 1.7e-14 54.2 0.00024 0.069 13.1
pfu_aug2.0_1871.1_05284.t1 4 3 AAA_25 1008 1038 2.9e-10 39.8 0.00011 0.031 13.6
pfu_aug2.0_1871.1_05284.t1 2 2 Parvo_NS1 1012 1037 5.7e-08 31.9 4.1e-05 0.012 14.5
pfu_aug2.0_1871.1_05284.t1 3 3 IstB_IS21 1013 1037 2.4e-09 36.8 3.8e-05 0.011 15.1
pfu_aug2.0_1871.1_05284.t1 3 3 AAA_19 1014 1035 9.9e-10 38.0 0.00017 0.048 13.4
pfu_aug2.0_1871.1_05284.t1 3 3 ResIII 1014 1042 2.5e-06 27.4 0.0094 2.7 7.7
pfu_aug2.0_1871.1_05284.t1 4 3 AAA_22 1015 1037 3.7e-14 52.9 0.00017 0.048 13.7
pfu_aug2.0_1871.1_05284.t1 3 3 Mg_chelatase 1015 1034 3.8e-09 36.0 2.5e-05 0.007 15.5
pfu_aug2.0_1871.1_05284.t1 3 3 TIP49 1015 1059 8.1e-06 24.7 0.00017 0.047 12.3
pfu_aug2.0_1871.1_05284.t1 3 3 AAA 1016 1146 0.0 245.9 0.0 1.4013e-45 154.6
pfu_aug2.0_1871.1_05284.t1 3 3 AAA_5 1016 1044 4.0e-12 46.0 0.00033 0.093 12.4
pfu_aug2.0_1871.1_05284.t1 3 3 RuvB_N 1016 1049 6.4e-12 45.0 2.8e-06 0.00081 18.5
pfu_aug2.0_1871.1_05284.t1 3 3 AAA_14 1016 1096 3.8e-09 36.5 0.0014 0.39 10.6
pfu_aug2.0_1871.1_05284.t1 3 3 AAA_2 1016 1093 9.4e-07 28.8 0.00011 0.031 14.1
pfu_aug2.0_1871.1_05284.t1 3 3 Zeta_toxin 1016 1049 6.7e-06 25.3 0.0031 0.89 8.6
pfu_aug2.0_1871.1_05284.t1 3 3 AAA_17 1017 1046 2.5e-13 50.8 0.00014 0.04 14.7
pfu_aug2.0_1871.1_05284.t1 3 3 RNA_helicase 1017 1061 2.9e-11 43.4 6.1e-05 0.018 15.2
pfu_aug2.0_1871.1_05284.t1 3 3 AAA_33 1017 1059 1.5e-09 37.8 0.00048 0.14 12.0
pfu_aug2.0_1871.1_05284.t1 4 4 NACHT 1017 1036 1.4e-08 34.5 0.0047 1.4 8.5
pfu_aug2.0_1871.1_05284.t1 3 3 AAA_3 1017 1044 9.6e-07 28.4 0.0062 1.8 8.1
pfu_aug2.0_1871.1_05284.t1 3 3 AAA_24 1017 1033 1.9e-06 27.6 0.0015 0.43 10.1
pfu_aug2.0_1871.1_05284.t1 4 4 AAA_28 1018 1055 1.2e-08 35.1 0.0041 1.2 9.1
pfu_aug2.0_1871.1_05284.t1 3 3 AAA_18 1018 1043 3.0e-07 30.8 0.0066 1.9 8.8
pfu_aug2.0_1871.1_05284.t1 4 4 AAA_25 1059 1121 2.9e-10 39.8 0.029 8.2 5.7
pfu_aug2.0_1871.1_05284.t1 4 4 AAA_22 1060 1124 3.7e-14 52.9 0.84 240.0 1.8
pfu_aug2.0_1871.1_05284.t1 5 5 AAA_16 1066 1087 1.7e-14 54.2 0.6 170.0 2.0

Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug2.0_1871.1_05284.t1 gi|524894554|ref|XP_005103774.1| PREDICTED: peroxisome assembly factor 2-like [Aplysia californica] 0.0
pfu_aug2.0_1871.1_05284.t1 gi|676433726|ref|XP_009046994.1| hypothetical protein LOTGIDRAFT_138655 [Lottia gigantea] 0.0
pfu_aug2.0_1871.1_05284.t1 gi|115920972|ref|XP_785189.2| 0.0
pfu_aug2.0_1871.1_05284.t1 gi|701429114|ref|XP_010003319.1| PREDICTED: peroxisome biogenesis factor 6 [Chaetura pelagica] 0.0
pfu_aug2.0_1871.1_05284.t1 gi|513177035|ref|XP_415006.4| PREDICTED: peroxisome assembly factor 2, partial [Gallus gallus] 0.0

Transcript
Transcript IDpfu_aug2.0_1871.1_05284.t1
Definition-
>pfu_aug2.0_1871.1_05284.t1
atgactgccagagcacgaagagcgactttgttggccaaagattacaaggatgacagacatagactacatttacaaataag
tcggttacatgcaaatattctagaagcaaccacagacagacatacatttcatgttgcggttgtaggaaagagaattcctc
cagagaaacgagtgtcctctgctgtgtccacacccccatccgccctatcatcagggggttactcttcccctatttattcc
tttgacagactttcatattcgggtagtcagtgttctacatcctgcagtcaaaaacattttgaatcggatgatgatttgag
caatgatagcgtagaaatactttcaactgttcatatttatgagcatgacacaactaaatccagagacgaagagattttga
tcacttgcagttatgatttcctctcccattatcagcttgaccatgagaatgatattcatgtcaaaatggtgaatttattt
ccggtacaaaagatggtcataggagtatttaatgacttcgatttatttagcaaactacaaagagagaaattttgtcgtga
cctgttactggaggtctgtcagacgtcagttttgcttaggtccaacgatttatttcttgcttctagtcccaaaatattgt
atgaagagaacagtgatgatacaagtagaaacaacagtgatctacatgtgatagaatgctgtccaatccgacatggtatt
ttaacacttgatacagaattaatcttttcatgcttggaagatgagggtgtaagacagaaagaatttttatttacccttcc
gcgtagtttatccaaagaaaagaaagacctttttcttgtctcagacttctgcaagcctatgaaaggaccatctttgcagt
cttcattttcatattcgagagattcgagtccgttgacagctgatgagtttgacattaattttgagtgcattgaacagcag
gtgttatggctacggctgctttgtaaaccacagaatgacgccttgtttgatccaatgtatgtgataggcatgtccaagga
aacaatgctcaaatacgcactctttgaagaaagtcttgtgaaagtttctctgagcataaaaattcctgttgtagcatcaa
gaattgctatgattaagtgtgtttgtgttaatatgctcccaaatgaagataaagtgtatatttcaccactgctcaaattc
aaccttcaaaacaatagctgtgctatgtctttggacatctctgaagtcttaaaaattgagcgcctgaaagaggctgcaga
aagtgacgttgaccttgggaccgtcagcacttccttacacacagacctacctgtggcagaggaagtcatcatatcctttg
tcatgtcaccatggtatcatccaagcaaagtcagtgtcgaggccatattaagctacttcagtgttccaaggttacttaca
aagggtgacattcttccaatacagagcagagatgacccagagtattcctcctcacaaggacctttagagaagcgacagac
aaccatattttttaaagttgtcaaaattgtaggcccgaagtcaaactttcccagctacatttgtgacagacttttgacaa
agctgattcagcgcctgaaagaggctgcagaaagtgacgttgaccttgggaccgtcagcacttccttacacacagaccta
cctgtggcagaggaagtcatcatatcctttgtcatgtcaccatggtatcatccaagcaaagtcagtgtcgaggccatatt
aagctacttcagtgttccaaggttacttacaaagggtgacattcttccaatacagagcagagatgacccagagtattcct
cctcacaaggacctttagagaagcgacagacaaccatattttttaaagttgtcaaaattgtaggcccgaagtcaaacttt
cccagctacatttgtgacagacttttgacaaagctgattcagcaaggatctgtacacagttatgtacccttggtgatgga
accttaccttatcaagagacccctgacttactgggatcattgttatcaaaatggtatgaatgagtacgtggaaaaactag
agtccctcattaggccccatctgcacaataggctggattttaccaatatgaaggacgttttaccgtcagtgatgttgata
ggagcctctggatgcggtaaaactacaactacctatacagtagccaggaggctgaaccttaatgtactcaaggtaaattg
tcacagtttatatggtgaggcccctgctgctatagaagccaggatattcaacattgtcagtgaagctattaattactccc
cctgtatactgctgttacacagtatccatgccctgggtaaagacaaggaaaggaacagtgatgatccgcgagtggcgagt
gcttttagagcaagtataaagaggttaatggaggagcacagtgaataccctgtagttgtcgtgggaacgacccactcccc
cgcagtgctggctgctgatatacacgaggcattcttacattctgtcaacatagaggtgcctaatgagtacgacagagcag
agattcttgatgcattactacagaatgtatgttactctggtgatttatgtggacaatacctagcccaaagaacagctggt
tatgttctgggagatttggtggcccttgtttctcatgcggcaagaggtgcttataaggcagtcatgaaagactgtttggg
aacaaagaaagctttgagttatgaggaggaggaggacctagcatcagctggtattgtagtacaacatgagaactttgtga
cagcaatagatcagctacaggcagctcactctgatactataggggctccaaagttcccagaactattggcttcagggctc
aggagatctggtttactattctatgggccaccaggcacaggaaaaactatgatggccaaagccatagctacagagtgttc
tctgaacttcctcaggttgcccatgacaaganaattaccattacagttcccagaactattggcttcagggctcaggagat
ctggtttactattctatgggccaccaggaacaggaaaaactatgatggcaaaagccattgctacagaatgttctctgaac
ttcctcagtgtgaaaggaccagagttgatcaatatgtatgtaggacaaagtgaacaaaatgttagagaagtttttgagcg
agcccgtagtgccacaccctgtgtaattttctttgatgagttggactcactggctcctaacagagggaaatcaggtgact
caggaggagtcatggacagggttgtctcacagctgttggcggagctcgatggactaaacaagtcatgtgatatatttgtc
attggagctacaaacagacctgatctattagatccggctctactaaggccaggaaggtttgacaagttactgtatctagg
agtgtcagaggacaatgcatcacagctcaaaatcctacaggctctcactaggaaattcaagctgagtaaggaccttgacc
ttgaaaccatagttgaccgctgtccaaacacactgaccggtgcagatttctatgctctgtgttcagatgctatgttatat
gccatgaaggataggatacgtctgttacaagatggtaaaaccacagatcagtcagctctggaggtcacagaggacaattt
cttacaggctctctccaaactcactccatccgttactaaagcagaactagatcgttacaaacagatccaagcacgtttct
ctggacagcaaataaaaccagacgacacatccgacgcacttagaaaattagacttctcgcaagttgatttccactaa

Protein
Protein IDpfu_aug2.0_1871.1_05284.t1
Definition-
>pfu_aug2.0_1871.1_05284.t1
MTARARRATLLAKDYKDDRHRLHLQISRLHANILEATTDRHTFHVAVVGKRIPPEKRVSSAVSTPPSALSSGGYSSPIYS
FDRLSYSGSQCSTSCSQKHFESDDDLSNDSVEILSTVHIYEHDTTKSRDEEILITCSYDFLSHYQLDHENDIHVKMVNLF
PVQKMVIGVFNDFDLFSKLQREKFCRDLLLEVCQTSVLLRSNDLFLASSPKILYEENSDDTSRNNSDLHVIECCPIRHGI
LTLDTELIFSCLEDEGVRQKEFLFTLPRSLSKEKKDLFLVSDFCKPMKGPSLQSSFSYSRDSSPLTADEFDINFECIEQQ
VLWLRLLCKPQNDALFDPMYVIGMSKETMLKYALFEESLVKVSLSIKIPVVASRIAMIKCVCVNMLPNEDKVYISPLLKF
NLQNNSCAMSLDISEVLKIERLKEAAESDVDLGTVSTSLHTDLPVAEEVIISFVMSPWYHPSKVSVEAILSYFSVPRLLT
KGDILPIQSRDDPEYSSSQGPLEKRQTTIFFKVVKIVGPKSNFPSYICDRLLTKLIQRLKEAAESDVDLGTVSTSLHTDL
PVAEEVIISFVMSPWYHPSKVSVEAILSYFSVPRLLTKGDILPIQSRDDPEYSSSQGPLEKRQTTIFFKVVKIVGPKSNF
PSYICDRLLTKLIQQGSVHSYVPLVMEPYLIKRPLTYWDHCYQNGMNEYVEKLESLIRPHLHNRLDFTNMKDVLPSVMLI
GASGCGKTTTTYTVARRLNLNVLKVNCHSLYGEAPAAIEARIFNIVSEAINYSPCILLLHSIHALGKDKERNSDDPRVAS
AFRASIKRLMEEHSEYPVVVVGTTHSPAVLAADIHEAFLHSVNIEVPNEYDRAEILDALLQNVCYSGDLCGQYLAQRTAG
YVLGDLVALVSHAARGAYKAVMKDCLGTKKALSYEEEEDLASAGIVVQHENFVTAIDQLQAAHSDTIGAPKFPELLASGL
RRSGLLFYGPPGTGKTMMAKAIATECSLNFLRLPMTRXLPLQFPELLASGLRRSGLLFYGPPGTGKTMMAKAIATECSLN
FLSVKGPELINMYVGQSEQNVREVFERARSATPCVIFFDELDSLAPNRGKSGDSGGVMDRVVSQLLAELDGLNKSCDIFV
IGATNRPDLLDPALLRPGRFDKLLYLGVSEDNASQLKILQALTRKFKLSKDLDLETIVDRCPNTLTGADFYALCSDAMLY
AMKDRIRLLQDGKTTDQSALEVTEDNFLQALSKLTPSVTKAELDRYKQIQARFSGQQIKPDDTSDALRKLDFSQVDFH

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Okinawa Institute of Science and Technology
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