Gene
| Gene Model ID | pfu_aug2.0_182.1_07113 |
|---|---|
| Locus | scaffold182.1 : 110672 ... 113125 : - |
| To GenomeBrowser | scaffold182.1:110672..113125 |
| Genes list of scaffold | scaffold182.1 |
| Synonym | pfu_aug1.0_2890.1_23106 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_182.1_07113.t1 | 3 | 1 | zf-C3HC4_2 | 13 | 56 | 1.6e-06 | 27.9 | 1.1e-09 | 1.6e-06 | 27.9 |
| pfu_aug2.0_182.1_07113.t1 | 3 | 2 | zf-C3HC4_2 | 97 | 128 | 1.6e-06 | 27.9 | 0.46 | 680.0 | 0.4 |
| pfu_aug2.0_182.1_07113.t1 | 3 | 3 | zf-C3HC4_2 | 167 | 189 | 1.6e-06 | 27.9 | 10.0 | 15000.0 | -5.8 |
| pfu_aug2.0_182.1_07113.t1 | 3 | 1 | SGL | 375 | 445 | 5.3e-06 | 26.0 | 0.03 | 45.0 | 3.2 |
| pfu_aug2.0_182.1_07113.t1 | 3 | 2 | SGL | 517 | 576 | 5.3e-06 | 26.0 | 0.25 | 370.0 | 0.3 |
| pfu_aug2.0_182.1_07113.t1 | 3 | 3 | SGL | 615 | 661 | 5.3e-06 | 26.0 | 1.4e-06 | 0.0021 | 17.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_182.1_07113.t1 | gi|291231823|ref|XP_002735871.1| | PREDICTED: tripartite motif-containing protein 2-like [Saccoglossus kowalevskii] | 6.0e-24 |
Transcript
| Transcript ID | pfu_aug2.0_182.1_07113.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_182.1_07113.t1 atggacagagaagaaaaaccagacgagttgatcatatgtccattgtgccacgacctctttaattctccaaaatcattact ttgtctacatacgttttgtaaagtatgtcttcatacatacatgtcaaaagaattggaaaacaatggaaatgccgtgtgtc cagtttgtcattctagcgttggtgatatcaacagagacaagtacgatgattggttgaataatctaccttcaaactttatg gtgaattctctcatggaccgtgaaaaatcgagaactggtaatagaaactgtgaagtttgtgaacagttagaaagagtaaa tgctgcgacttcgtattgtgtagaatgttgtgaggcgtattgcgatcaatgttcacaaaaccataccgtccttaaaatgc tacggaagcatagattgctgccggtagacgaagttcgtatgcatgggatttcctctaccgaagaatttattccagactgc cttgtccatataaataaaaaacttgaattattctgctttgaccatgagatgccttgctgtatcacttgtatgactattca tcaccggggatgccagaatgttcaaacactcgtcgaagctgcaaacatggtgcaaaaagataccaatttcattgctttta ctgatcgaatatccaaactaatcaacagtataaaagaacaacttacaagcaatgaaaaaaagggtagagagttaatgtcc caactatccaaggtagaaaatcaggcccagcgaaaaaaggaggaaatgattgcacatattgaggctttatacaagacgtt tgaagaaggaattcaaactataaagaagcagtacgaaagagacgaccaatctgaggtattgtcacacaaaatgctactgc ttcagaatttcctgaaagctgtcgatacattaaaaccctcatcatcgaacattgcaatcttcctagaatatcaaaagatg aaaggaaaagaaaatgaagtaagcactttgctggatcaatacatagcaaaaagcagaccagagtccatagaatacatacc cagtgagactgccaggaatttcgattctattgtcacttcattaggtgaaaccgaaatacgtgtcatcaacccttttcaac gagcacaggtttccatcaagaaacctaagtcacacaatttgaaagaaatcctcacaatacaagaaaaggatgttcgattt actgatgctgtatttctagactcagacacggtcatttccgtggatgactcgaaaaattgtatctgggcattcaacataaa tggtacatgcatgagccgatcggatttaccttgtagaccttgggctgtgacagtggctggcagctccgacgcagttatca ctcttcgcgagagaagaatgttacaattctttacattccataaaaaatccaagaaactgaacaaaaagcgaacaattatc ctaaaggaagaaccccttggtatcgacttttcccaacaatgcttaccttgggctgtgacagtggctggcagctccgacgc agttatcactcttcgcgagagaagaatgttacaattctttacattcaataaaaaatccaagaaactgaacaaaaagcgaa caattatcctaaaggaagaaccccttggtatcgacttttcccaacaatgcttgttcgtaacattttcacagaaaataatg aagcttaagctagatggaacaaccatcactgaaatgagcatacccggtgcgacatcttccctacatggaatatcttcctt taaaaacaatgtcatagttggagaccaaggctacgacagaaagtacgatgtacacgtcatcaacttagatgccaaccctc gcattcagtatcagaggaagttccagaacgttgcgtcccctgtgggcgtggcaactgataaaagtggaaatatatatgtt gctggatttagttcgcataacgtggtcaaagcatctgaagacggcgctattattagcgagatactttcaaattcagccgg atttgagtggccgatgggaatcgatatctcgcatgacgggaagagactgattttgtcacatcaaagcaaaataacgattt ttgaatttctgtaa |
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Protein
| Protein ID | pfu_aug2.0_182.1_07113.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_182.1_07113.t1 MDREEKPDELIICPLCHDLFNSPKSLLCLHTFCKVCLHTYMSKELENNGNAVCPVCHSSVGDINRDKYDDWLNNLPSNFM VNSLMDREKSRTGNRNCEVCEQLERVNAATSYCVECCEAYCDQCSQNHTVLKMLRKHRLLPVDEVRMHGISSTEEFIPDC LVHINKKLELFCFDHEMPCCITCMTIHHRGCQNVQTLVEAANMVQKDTNFIAFTDRISKLINSIKEQLTSNEKKGRELMS QLSKVENQAQRKKEEMIAHIEALYKTFEEGIQTIKKQYERDDQSEVLSHKMLLLQNFLKAVDTLKPSSSNIAIFLEYQKM KGKENEVSTLLDQYIAKSRPESIEYIPSETARNFDSIVTSLGETEIRVINPFQRAQVSIKKPKSHNLKEILTIQEKDVRF TDAVFLDSDTVISVDDSKNCIWAFNINGTCMSRSDLPCRPWAVTVAGSSDAVITLRERRMLQFFTFHKKSKKLNKKRTII LKEEPLGIDFSQQCLPWAVTVAGSSDAVITLRERRMLQFFTFNKKSKKLNKKRTIILKEEPLGIDFSQQCLFVTFSQKIM KLKLDGTTITEMSIPGATSSLHGISSFKNNVIVGDQGYDRKYDVHVINLDANPRIQYQRKFQNVASPVGVATDKSGNIYV AGFSSHNVVKASEDGAIISEILSNSAGFEWPMGIDISHDGKRLILSHQSKITIFEFL |
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