Gene
| Gene Model ID | pfu_aug2.0_1815.1_18553 |
|---|---|
| Locus | scaffold1815.1 : 127946 ... 131690 : + |
| To GenomeBrowser | scaffold1815.1:127946..131690 |
| Genes list of scaffold | scaffold1815.1 |
| Synonym | pfu_aug1.0_8852.1_53244 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1815.1_18553.t1 | 1 | 1 | Cauli_VI | 38 | 80 | 2.2e-15 | 56.4 | 4.5e-19 | 3.4e-15 | 55.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1815.1_18553.t1 | gi|553727144|ref|NP_001272939.1| | ribonuclease H1 isoform 2 [Anolis carolinensis] | 3.0e-11 |
| pfu_aug2.0_1815.1_18553.t1 | gi|591361589|ref|XP_007055710.1| | PREDICTED: ribonuclease H1 isoform X2 [Chelonia mydas] | 1.0e-10 |
| pfu_aug2.0_1815.1_18553.t1 | gi|558111681|ref|XP_006112114.1| | PREDICTED: ribonuclease H1 isoform X2 [Pelodiscus sinensis] | 3.0e-10 |
Transcript
| Transcript ID | pfu_aug2.0_1815.1_18553.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1815.1_18553.t1 atggccaacgttgacgaaaaagtgacgtatcacatgacgggatcggtcaggattcggattctggttcagatgatgaaaat gaccaaggataagaaaaatacggataaaaactactatgcagtgacaaaaggtagaaactgtggaatatttaaacaatgga gtcaagtgaaacctttagtggacaaatatccaggagccgcgttcaaaggtttcaacgaattacaggaagccattaatttc atggtaatgggtggaattgaaatccacaatgttatgttgtatgaagatacaacaactacaacaaatgctgataatgtcat ggtttttacggaaagaagcggaatttcgctgtcagtagaaacaaatcctgacaaagataccgatgaaatagcgtccgata gtgagacagaggagaaattcttggatgcctcagaagaacttgttgtttatattgatggttgttgtttgaataatgggaac acaaatagt |
|
Protein
| Protein ID | pfu_aug2.0_1815.1_18553.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1815.1_18553.t1 MANVDEKVTYHMTGSVRIRILVQMMKMTKDKKNTDKNYYAVTKGRNCGIFKQWSQVKPLVDKYPGAAFKGFNELQEAINF MVMGGIEIHNVMLYEDTTTTTNADNVMVFTERSGISLSVETNPDKDTDEIASDSETEEKFLDASEELVVYIDGCCLNNGN TNS |
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