Gene
| Gene Model ID | pfu_aug2.0_179.1_30360 |
|---|---|
| Locus | scaffold179.1 : 238269 ... 254801 : + |
| To GenomeBrowser | scaffold179.1:238269..254801 |
| Genes list of scaffold | scaffold179.1 |
| Synonym | pfu_aug1.0_1837.1_08144 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_179.1_30360.t1 | 1 | 1 | zf-CHCC | 87 | 114 | 3.2e-08 | 33.2 | 3.4e-12 | 5.0e-08 | 32.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_179.1_30360.t1 | gi|524915538|ref|XP_005112566.1| | PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_179.1_30360.t1 | gi|676428960|ref|XP_009045445.1| | hypothetical protein LOTGIDRAFT_156565 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_179.1_30360.t1 | gi|340371727|ref|XP_003384396.1| | PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial-like [Amphimedon queenslandica] | 4.0e-28 |
| pfu_aug2.0_179.1_30360.t1 | gi|354506480|ref|XP_003515288.1| | PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial isoform X1 [Cricetulus griseus] | 2.0e-27 |
| pfu_aug2.0_179.1_30360.t1 | gi|241048562|ref|XP_002407295.1| | NADH ubiquinone oxidoreductase subunit, putative [Ixodes scapularis] | 2.0e-27 |
Transcript
| Transcript ID | pfu_aug2.0_179.1_30360.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_179.1_30360.t1 atggcccttgcaaggacattcgttagatcagcaacaattcggacacttgcacgactttcctcgtcatctgccaaacatgt gaccgatggtgaaaacgtagatgttacaactcacaccggacaggtttgggacaaagaagattataggagaattcgttttg tggatacagcaaaacaggtgaatccttattttgctatagacctgattgaggaggatccagtggtagtggttaacgctagt tcggtatggagtgacagtggaggggcaatggggcatcctaaagtttatatcaacttggatagacctcaagttggagtgtg tggatattcagggagaaaatttattcagaagaaattctacgatgagaaaacacacggaccttctataacatatgaacagt atttagaggaagtaagaccaaaaccgaggaattaa |
|
Protein
| Protein ID | pfu_aug2.0_179.1_30360.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_179.1_30360.t1 MALARTFVRSATIRTLARLSSSSAKHVTDGENVDVTTHTGQVWDKEDYRRIRFVDTAKQVNPYFAIDLIEEDPVVVVNAS SVWSDSGGAMGHPKVYINLDRPQVGVCGYSGRKFIQKKFYDEKTHGPSITYEQYLEEVRPKPRN |
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