Gene
| Gene Model ID | pfu_aug2.0_1701.1_05191 |
|---|---|
| Locus | scaffold1701.1 : 98527 ... 103695 : - |
| To GenomeBrowser | scaffold1701.1:98527..103695 |
| Genes list of scaffold | scaffold1701.1 |
| Synonym | pfu_aug1.0_37764.1_62928 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1701.1_05191.t1 | 1 | 1 | RVT_1 | 262 | 420 | 7.5e-25 | 87.5 | 3.1e-28 | 1.5e-24 | 86.5 |
| pfu_aug2.0_1701.1_05191.t1 | 1 | 1 | rve | 821 | 934 | 2.3e-23 | 82.5 | 1.1e-26 | 5.4e-23 | 81.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1701.1_05191.t1 | gi|308492221|ref|XP_003108301.1| | hypothetical protein CRE_10000 [Caenorhabditis remanei] | 0.0 |
| pfu_aug2.0_1701.1_05191.t1 | gi|308467446|ref|XP_003095971.1| | hypothetical protein CRE_06930 [Caenorhabditis remanei] | 0.0 |
| pfu_aug2.0_1701.1_05191.t1 | gi|308484436|ref|XP_003104418.1| | hypothetical protein CRE_22890 [Caenorhabditis remanei] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_1701.1_05191.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1701.1_05191.t1 atgtctcaggatttttatgtcgtagaaactttgaacaaaaactttatcctaggaagagattggctcaaagagaatggtgt acgcctttattttgacttaggaatgctaagagtaggacagacgtatgtgaaacttgaggaggacactcatatatgctcca ttctgagactcagcaagcgcacaacgattaaaccgcagacagccgttatatgtcacgtaaaattacaaaaaggcttccgc ttatcgaactcgagactaatagaaatatcccaacttgaacccggatgtatctcaaacgaaccaggaatcacgctcaagga gtcagtaaacacggtaaaatcgccttacaggatcccagtccttattatcaatgagacaaacaagagttatcgcctacgga gaggaggtgttattggaaaagcacgatctttgaactcacaagatattttagcaattgacgaagatgaacctatggaaatt gatgacccaaagcctgaggcgtcggacattgaagacttgtatgtacccgacggaaggcgaggagaggtaacaagactact tagaaacaacagagacctcattgctaagagtgactcggatcttggaggaacgcggactgtacaaatgaaaataaacaccg gaaaccacccacccatcaaaaacagaccttataggactcccttgaacaagagaaagatcatcgatcaagcgatagacgaa atgttagaggcaagggtaattcaaagatcccagtccccttggtcatttcctttggtggtagcaaagaaaaaggatggaag tgaccggatgtgcgtcgacttcagaacactcaataaagttgtgaaaccaatctcattccccctccctttgatcgatgaca tcctatctctgataggaaatgccaagtacttcaccaccttagacttgagacacggatattggcaagttactttggacgaa agcagcaaggaaaagacagctttcgcctgtcatcgagggcttttcgagtttaacaggatgcctttcggccttagtaatgc ccccgctgtctttcaggaactgatgaataccgtcttacaagggtgtgaaggattcgccatggcatacttggatgacatcc tgatattttctcaagacgaccctaaacaacatatccggcacatacaagaggtattcaatcgactcaggcagcacaatctc aagctcaaactgaagaagtgtgctttctttaaggaggaaaccgaatacctgggtttcttgataaacaaggatggtatcgc cccggaccctaaaaaggtcgaggctgtcaaaaatctaccaacacctaaaagtgtcagagaagtacgcggctttattggaa tgtgcagctattacagaagatttgtcccaaacttctcaaagatagcggaacctcttctcaatttgacgaagaaatatgca cgattcaagtggacggacgaatgtcagcgcgccttcgattttctcaaggacagtcttacggtagtaccactcctcaccta cccggatacaaacaaaccgtacgtcttatacactgatgcgagtgacagttgtgtgggcgcgtgccttactcaggaaactg ataagggtgaagaaaaaccaatctacttcttatcacacaagctcagccacacacagaagaaatggtctacaatcgaaaaa gaagcctttgctattcattatgcccttcagaagttggaccactacctacatggagcgaaatttaccatcaaaacggatca caaacccctgaaatacctcctggactcgcctatgcaaaacaagaaaatacaactttgggctttaagcattgctggataca attgtaagatcgagtatgtcaaaggtgaagacaatcactgtgcggatcttttgtctaggataccacaccccatgacaaac aaagaacacgagaaatctgaatacgagccggatatagatgacagagcatttgagataggagctattaactccaacgaatt caaccctagagactttgctagttgccacgtggaaggtcatggcgaaatttccaaagcaatttcagaccttcctgaagagt tcaatatgaaggaggaacagaataaagatccagaggtactaaaactcaaggacaggttaacgaaaggagcagcgactaaa gctgagcagacacattatttcgaagatgaaaaaggactccttcactacctatctcaacctgaatccgaggaccctaagct acggctgtatatacctcatgaaatggagacagtcgtcctcaaacaatatcacgatcaacttggtcacatggctttagata aaacctacgactcaatgcgtcagaagtacttctttcccaacatgtacaagaaaattcatggttacattgagaagtgtgtc acgtgtcagacgaggagttcaaagaaaacaaaaccacccctcagggagaccgaagtaccaccatatcccttcgccaaaat cggtcttgacttatctggtccttatccgacgacattatccggaaacaagtatatcgtctcttttatagatgtatattccg gatggccagaagcctaccctgttccggacaagtcagctgaccggatcgtacatcttatcctggaggaaattttccctaga tttggttgccccctcgagattatttccgacaatggaactgaaaatgtcaacagaaaagtgcaggaaactttagacgccat gaatatatatcatatcaagacatcattctacagtccccaagctaacgggaaggtcgagagattccatcgtaccctgcatg acgtcatgtctaagaaaattcaggaagatgtgcagacatgggacctgtacctgaatcaaacactggctgctatcagattc cacgttaatgagtcatcgaaattctcgccttatttccttctttacaaccgggatgtcgtcctcccactggacaccatatt gaaaccaagaaaaaggtacatgggcgaagatcagcaccaaatagccctccaacaacaacataaatcattcctcttggttc acagaaacatgaaagaggccaaaaggagacagaaaaagtacgctgacaaaaacagtaaagaggaaaattttcagatcggg gacccagtctatgtaaaaaatcatcgaagggaaaacaaactggatattaagtggcaaccctacttcaggataatcgatca aacaggaccattgtcgtttatcgtgaaaaatcagctggacggaacaacaacaaagtcacatgctcgacatctaagacaag caaagatcgatgaatggaaaatcccgagggatactgctggaaacctattaaggaaaacaacatacgtagtcccccctgat tattctgacagtgatgaggaagtacaaactccccaagatatggtcgtaaaacatcgacaacaagagagagaaggatcgtc tgatgaagatgacattccacttatggaacttcgtagacgtcttcgttgtcgtgaaatgcctgagacacctgacaatgaca ctagacttgacgttccggtgaatcaacctgtaaataccgaacaaaatcgcgccgaagaaaacatggaaattgacgcgatc tctaagaaaccagagacgggattcttacttgaaaacaaggcttcctcccctaaaaccgcccaaggaggtcctcccaccac aataagtgtatgcagaggatacactttgagaagacgcatccccgttacgacaatcagtattattgagcaagctaactcac ctccgccctcacctccgccccagccatccagtcagtctggcccacagaatgacaatgccaatcacaatgtatctgcatcc cccgctcatcctgtacaaggtcatccccctgttatgcctactaactatcccgctatacgtttggcaccttataccccaat tccatttcacaatcacacacttgtaagggatagtagtctgcgttaccttcctcttagtaacgtagagcacagacttgcaa taaacaatgacctttatacctcaaacttagaacgtatccgaacacaaaggctgcttagaaggatggtggtacactctgaa cagcccctgttaagttcgcttgctcagcgcatggttaggcgcagacgattgtttgatttagggtcactgggtcaactacc tcaaggtcaagaccagaacaataacgcaacttcctccgaccgagatcagtaa |
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Protein
| Protein ID | pfu_aug2.0_1701.1_05191.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1701.1_05191.t1 MSQDFYVVETLNKNFILGRDWLKENGVRLYFDLGMLRVGQTYVKLEEDTHICSILRLSKRTTIKPQTAVICHVKLQKGFR LSNSRLIEISQLEPGCISNEPGITLKESVNTVKSPYRIPVLIINETNKSYRLRRGGVIGKARSLNSQDILAIDEDEPMEI DDPKPEASDIEDLYVPDGRRGEVTRLLRNNRDLIAKSDSDLGGTRTVQMKINTGNHPPIKNRPYRTPLNKRKIIDQAIDE MLEARVIQRSQSPWSFPLVVAKKKDGSDRMCVDFRTLNKVVKPISFPLPLIDDILSLIGNAKYFTTLDLRHGYWQVTLDE SSKEKTAFACHRGLFEFNRMPFGLSNAPAVFQELMNTVLQGCEGFAMAYLDDILIFSQDDPKQHIRHIQEVFNRLRQHNL KLKLKKCAFFKEETEYLGFLINKDGIAPDPKKVEAVKNLPTPKSVREVRGFIGMCSYYRRFVPNFSKIAEPLLNLTKKYA RFKWTDECQRAFDFLKDSLTVVPLLTYPDTNKPYVLYTDASDSCVGACLTQETDKGEEKPIYFLSHKLSHTQKKWSTIEK EAFAIHYALQKLDHYLHGAKFTIKTDHKPLKYLLDSPMQNKKIQLWALSIAGYNCKIEYVKGEDNHCADLLSRIPHPMTN KEHEKSEYEPDIDDRAFEIGAINSNEFNPRDFASCHVEGHGEISKAISDLPEEFNMKEEQNKDPEVLKLKDRLTKGAATK AEQTHYFEDEKGLLHYLSQPESEDPKLRLYIPHEMETVVLKQYHDQLGHMALDKTYDSMRQKYFFPNMYKKIHGYIEKCV TCQTRSSKKTKPPLRETEVPPYPFAKIGLDLSGPYPTTLSGNKYIVSFIDVYSGWPEAYPVPDKSADRIVHLILEEIFPR FGCPLEIISDNGTENVNRKVQETLDAMNIYHIKTSFYSPQANGKVERFHRTLHDVMSKKIQEDVQTWDLYLNQTLAAIRF HVNESSKFSPYFLLYNRDVVLPLDTILKPRKRYMGEDQHQIALQQQHKSFLLVHRNMKEAKRRQKKYADKNSKEENFQIG DPVYVKNHRRENKLDIKWQPYFRIIDQTGPLSFIVKNQLDGTTTKSHARHLRQAKIDEWKIPRDTAGNLLRKTTYVVPPD YSDSDEEVQTPQDMVVKHRQQEREGSSDEDDIPLMELRRRLRCREMPETPDNDTRLDVPVNQPVNTEQNRAEENMEIDAI SKKPETGFLLENKASSPKTAQGGPPTTISVCRGYTLRRRIPVTTISIIEQANSPPPSPPPQPSSQSGPQNDNANHNVSAS PAHPVQGHPPVMPTNYPAIRLAPYTPIPFHNHTLVRDSSLRYLPLSNVEHRLAINNDLYTSNLERIRTQRLLRRMVVHSE QPLLSSLAQRMVRRRRLFDLGSLGQLPQGQDQNNNATSSDRDQ |
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