Gene
| Gene Model ID | pfu_aug2.0_1701.1_05189 |
|---|---|
| Locus | scaffold1701.1 : 73456 ... 93927 : + |
| To GenomeBrowser | scaffold1701.1:73456..93927 |
| Genes list of scaffold | scaffold1701.1 |
| Synonym | pfu_aug1.0_77992.1_71131 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| eukaryotic translation initiation factor partial | GO:0097159 GO:1901363 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1701.1_05189.t1 | 1 | 1 | RRM_1 | 183 | 248 | 9.2e-14 | 50.8 | 3.6e-17 | 1.8e-13 | 49.9 |
| pfu_aug2.0_1701.1_05189.t1 | 1 | 1 | RRM_6 | 183 | 248 | 3.1e-11 | 43.0 | 1.3e-14 | 6.4e-11 | 42.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1701.1_05189.t1 | gi|676481920|ref|XP_009062532.1| | hypothetical protein LOTGIDRAFT_128337, partial [Lottia gigantea] | 0.0 |
| pfu_aug2.0_1701.1_05189.t1 | gi|470659361|ref|XP_004331460.1| | PREDICTED: eukaryotic translation initiation factor 4B-like, partial [Tursiops truncatus] | 2.94273e-44 |
| pfu_aug2.0_1701.1_05189.t1 | gi|726997346|ref|XP_010388950.1| | PREDICTED: eukaryotic translation initiation factor 4B, partial [Corvus cornix cornix] | 4.99997e-41 |
| pfu_aug2.0_1701.1_05189.t1 | gi|148744692|gb|AAI42794.1| | Eif4ba protein [Danio rerio] | 8.99998e-41 |
| pfu_aug2.0_1701.1_05189.t1 | gi|532078822|ref|XP_005325183.1| | PREDICTED: eukaryotic translation initiation factor 4B [Ictidomys tridecemlineatus] | 1.0e-37 |
Transcript
| Transcript ID | pfu_aug2.0_1701.1_05189.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1701.1_05189.t1 atgcaccagagatatacccaaaaaacacagagtatacaaaagaacagcaagagacgcaaagagacatacgacatagaaac attaaacagaaaagactacacaaaaccaacgagatcaacggaaatcggtgtcgaccaaggaaagaaaaagcccaaaatga agggcacaaagatgaatttgacagaatttctctccgatgaaaaaggaggaggtggaggacctgtaatggcagggaaaata gactgggcggcagaaatggagaccagcaatgatgtggaaggaaagaaaaagcccaaaatgaagggcacaaagatgaattt gacagaatttctctccgatgaaaaaggaggaggtggaggacctgtaatggcagggaaaatagactgggcggcagaaatgg agaccagcaatgatgtggaagattttgatgacattcagtatggtagaccttccatcgacagatctaagttacccacagca cctaaagcttcccgcggaccggatgtcgacccgagtcgtataccaaataaccccccgttcacagcttttataggaaacct gccgtatgatacaactgcagacaaaattgaacagttctttcagaagctgaacgtattaaatgtgcggcttccatctgacc aggggaggatgaagggatttggttacgtagaatttggtgataaacaatcactcattgacgccctcttgttaaacgatgag gttctatctggaaggaaagtgagagtggatttagcaggtcaaaaccaacagaatgatcagagaagtggagggggttttgg acgtgagaggcagaatgaaggtcctgataggacagagggagactggaggcgtggacctccccctgagtcaggtaataata gtactgataggacatgggggactggaggcatggtcctccccccgagtcagaatttgacaggggaggtgatcgctacggtg atagaggaggcgatcgctatggtgatagaggtggtgatcgaggtggtgatcgctatggcgacaggggtggagatcgctat ggtgatagaggtggtgatcgctatggcaacagggatggtgatcgctatggtgacagaggaggtgatcgttatggtgacag aggaggtgatcgctacggcgacagaagaggaagtgatagatggggaagtagagacgaggggagggggtttgatagagatg atcgagatgggggatcaaggggatatgatagaggatcctcatatagagacagaaatagagactatgatgataggaggcct tcacggggttacgatgatagaggacagcgtgatcgctatgaggacgatagaggacctcagagggacagatatgatgatcg aggcccaccaagggatagatatgatgacagaggtccccagcgtgatcgctatgacgacagaggtccacctagagatcgtt atgacaatcgccgtggttacgacagacgcgatggaggtggttatggaagagacagatacgatgatagagaaagaagagga ggttttggagctggatataggagagacgatagaagagcctgccccagagggcaaaccgtccgagggcaaaccgtctgagg acaaaccgtctgagggcaatgtccccaaggcaacaccgccaaaaccctcgtcagcctccatatttggtggtgctaaacca gtggatactgctgctagggaacgagagattgaagaacgactgcagaagcaaagattggaggaggccaaaaaactagagga agagaaagaaaatagatatgtaaataatccaagtgctgatagaggttacagaaaacggcgggatagtgagaattcccagg aagatggctacagtggaagtagaagagagaggagacttagtagtggtagctcaagtaaaggcaggtcaggtcccccacca gtgacgtccagtcggtcacggaaagacagtaatacgtcaaaccattcacaggaagtgttctccggaggggagggagataa agacgagcccaaaagcccggtgtcaccttcatccagtaacgaccaaccaaggtctcctcctgtgaaagaagatgttaagt tagtaccagcacctcctccagctgtaaatccctggcagaaacgtcgagtagaaaccaaatctgctactgtatcagtgata tcagatggcaaaggtgactctcctgcagtgaacagaggtgacttcccaggtcaaggtcgtggagattttccaggtcaagg tcgcagtggtgactttccaggtcgaggtcgtagaggagggtcgtctgacaggggcagaggaaggggaggtaaaccaagca gtaggggacgagataagcacgtaccgcgatcggtagatgaaatgcccaaagtggaggacaagtcttctaaagattggagt gacagaaacaagtttgcaggattaatagatgacgatgatgaagaagacaataatcaagataatgaagtggagtcatag |
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Protein
| Protein ID | pfu_aug2.0_1701.1_05189.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1701.1_05189.t1 MHQRYTQKTQSIQKNSKRRKETYDIETLNRKDYTKPTRSTEIGVDQGKKKPKMKGTKMNLTEFLSDEKGGGGGPVMAGKI DWAAEMETSNDVEGKKKPKMKGTKMNLTEFLSDEKGGGGGPVMAGKIDWAAEMETSNDVEDFDDIQYGRPSIDRSKLPTA PKASRGPDVDPSRIPNNPPFTAFIGNLPYDTTADKIEQFFQKLNVLNVRLPSDQGRMKGFGYVEFGDKQSLIDALLLNDE VLSGRKVRVDLAGQNQQNDQRSGGGFGRERQNEGPDRTEGDWRRGPPPESGNNSTDRTWGTGGMVLPPSQNLTGEVIATV IEEAIAMVIEVVIEVVIAMATGVEIAMVIEVVIAMATGMVIAMVTEEVIVMVTEEVIATATEEEVIDGEVETRGGGLIEM IEMGDQGDMIEDPHIETEIETMMIGGLHGVTMIEDSVIAMRTIEDLRGTDMMIEAHQGIDMMTEVPSVIAMTTEVHLEIV MTIAVVTTDAMEVVMEETDTMIEKEEEVLELDIGETIEEPAPEGKPSEGKPSEDKPSEGNVPKATPPKPSSASIFGGAKP VDTAAREREIEERLQKQRLEEAKKLEEEKENRYVNNPSADRGYRKRRDSENSQEDGYSGSRRERRLSSGSSSKGRSGPPP VTSSRSRKDSNTSNHSQEVFSGGEGDKDEPKSPVSPSSSNDQPRSPPVKEDVKLVPAPPPAVNPWQKRRVETKSATVSVI SDGKGDSPAVNRGDFPGQGRGDFPGQGRSGDFPGRGRRGGSSDRGRGRGGKPSSRGRDKHVPRSVDEMPKVEDKSSKDWS DRNKFAGLIDDDDEEDNNQDNEVES |
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