Gene
| Gene Model ID | pfu_aug2.0_1676.1_21737 |
|---|---|
| Locus | scaffold1676.1 : 79750 ... 101115 : - |
| To GenomeBrowser | scaffold1676.1:79750..101115 |
| Genes list of scaffold | scaffold1676.1 |
| Synonym | pfu_aug1.0_2678.1_66409 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| loc734179 protein | GO:0004819 GO:0005524 GO:0005737 GO:0006425 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1676.1_21737.t1 | 1 | 1 | tRNA_synt_1c_R1 | 3 | 154 | 0.0 | 158.7 | 0.0 | 0.0 | 158.0 |
| pfu_aug2.0_1676.1_21737.t1 | 2 | 1 | tRNA-synt_1c | 8 | 39 | 0.0 | 240.6 | 0.32 | 1600.0 | -2.6 |
| pfu_aug2.0_1676.1_21737.t1 | 2 | 2 | tRNA-synt_1c | 153 | 390 | 0.0 | 240.6 | 0.0 | 0.0 | 239.4 |
| pfu_aug2.0_1676.1_21737.t1 | 1 | 1 | tRNA-synt_1c_C | 393 | 580 | 0.0 | 161.9 | 0.0 | 0.0 | 160.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1676.1_21737.t1 | gi|676467555|ref|XP_009057926.1| | hypothetical protein LOTGIDRAFT_228742 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_1676.1_21737.t1 | gi|84570116|gb|AAI10785.1| | LOC734179 protein [Xenopus laevis] | 0.0 |
| pfu_aug2.0_1676.1_21737.t1 | gi|524890233|ref|XP_005101664.1| | PREDICTED: probable glutamine--tRNA ligase-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_1676.1_21737.t1 | gi|348502993|ref|XP_003439051.1| | PREDICTED: glutamine--tRNA ligase-like isoform X1 [Oreochromis niloticus] | 0.0 |
| pfu_aug2.0_1676.1_21737.t1 | gi|542217153|ref|XP_005448788.1| | PREDICTED: glutamine--tRNA ligase-like isoform X2 [Oreochromis niloticus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_1676.1_21737.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1676.1_21737.t1 atgatggcttcaaacgacatcatccagcttttcacaggcattgggttaagtgaacagaaagctaaggaaacgttaaaaaa cgaacaagtgtcaaatactttgaaaactgttatagaacaggcaaagaaatattgtggagacagtattgataaagacgctg gcaaacttttgtacaatgttgcaacaagattgaaagctcaaatcaaggcccatcagtcactccttgtagagtatatagct acaaagaaaatcagcactgaagttcaactgaatgcggcattggactatctgttacatcatcctttaccccctgtagataa ggtcaaatttgaggcagaaagtggagtaggaataaacataacaccagatcagatagaggctgctgtagaagatgtaataa agaaatacagagatgaacttgtggacaaacggtataggttcaatatgggacttatcatgggttataagccattcaaggtt acccatgcctccgacaattttgacaagctatatgagtgtgcggtggagcttatcaggaggggccacgcctatgtttgtca catgaagggggaagacattaaaggattcaacacacccgactctccatggagggacagacctatagaagaatcattacagc tgtttgaagacatgaaaaatggtaaagtctctgaaggtgaggccactttaaggatgaaaacaacactagaggaaggaaag aaggatcctgtagcttatagaattaaatttacaccccatcataggacaggggataaatggtgtatatatcccacatatga ttttacacattgcctgtgtgactctattgagcacattacacactctctctgtaccaaagaattccagtcaagacggtcct cctactattggctatgtaatgtactagatctgtattgtccagtacagtgggagtatggcagactgaatctcaactacacg gtggtgtcaaaacgcaaaataggcaagctcatcaaagaaggctttgtaagagattgggatgaccctcgtttgtttacact gacagcattaagaaggagaggattcccacctgaagccattaacctcttctgtgccaaggttggtgtaacaatggcccaga ctgttatagacccttcattactagaggcctgtgttagagatgtacttaatgttactgctccaagagcaatggctgtcctt gagcccctaaaagtaaatatatctaatttccctgctgatcataaaggaaaagtaaccgtgccaaacttcccagccgacga gaaaagaggttcacacactgtgcccttctcttccactatttatatcgaaagatcagattatagagagaaatcagataaaa gttacaaaagattatcatcagaccaacctgttggattacgacatgcagggtttgtcataaaagtagagaaggaagtcaag gacagtgatggtaccttaatagagctggttgtctcatgttctcccacctcggacaccaacaagcctaaaggttttataca gtgggtgtccaatcctgtggtctgtgaagtcaggctatacgaaagattattcagacataaaagtccagaggatccaacag aagttcctggagggtttataacagatattaacgagaatactttgtcagtgaactccaatgcctacgtagatgtttctgtg aagggagccaaggtttacgacaagtttcagtttgagaggctcggcttctttagtgtggacagggacagtaaccctcaaaa gttggtgtttaacagaacagtaacacttaaggaggatccagggaaaaattaa |
|
Protein
| Protein ID | pfu_aug2.0_1676.1_21737.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1676.1_21737.t1 MMASNDIIQLFTGIGLSEQKAKETLKNEQVSNTLKTVIEQAKKYCGDSIDKDAGKLLYNVATRLKAQIKAHQSLLVEYIA TKKISTEVQLNAALDYLLHHPLPPVDKVKFEAESGVGINITPDQIEAAVEDVIKKYRDELVDKRYRFNMGLIMGYKPFKV THASDNFDKLYECAVELIRRGHAYVCHMKGEDIKGFNTPDSPWRDRPIEESLQLFEDMKNGKVSEGEATLRMKTTLEEGK KDPVAYRIKFTPHHRTGDKWCIYPTYDFTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNVLDLYCPVQWEYGRLNLNYT VVSKRKIGKLIKEGFVRDWDDPRLFTLTALRRRGFPPEAINLFCAKVGVTMAQTVIDPSLLEACVRDVLNVTAPRAMAVL EPLKVNISNFPADHKGKVTVPNFPADEKRGSHTVPFSSTIYIERSDYREKSDKSYKRLSSDQPVGLRHAGFVIKVEKEVK DSDGTLIELVVSCSPTSDTNKPKGFIQWVSNPVVCEVRLYERLFRHKSPEDPTEVPGGFITDINENTLSVNSNAYVDVSV KGAKVYDKFQFERLGFFSVDRDSNPQKLVFNRTVTLKEDPGKN |
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