Gene
| Gene Model ID | pfu_aug2.0_16567.1_26513 |
|---|---|
| Locus | scaffold16567.1 : 1 ... 2013 : - |
| To GenomeBrowser | scaffold16567.1:1..2013 |
| Genes list of scaffold | scaffold16567.1 |
| Synonym | pfu_aug1.0_7640.1_67718 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| general transcription factor iih subunit 3 | GO:0003824 GO:0044260 GO:0090304 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_16567.1_26513.t1 | 1 | 1 | Tfb4 | 5 | 115 | 7.3e-21 | 74.6 | 5.4e-25 | 8.0e-21 | 74.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_16567.1_26513.t1 | gi|676449013|ref|XP_009051917.1| | hypothetical protein LOTGIDRAFT_159336 [Lottia gigantea] | 9.0e-27 |
| pfu_aug2.0_16567.1_26513.t1 | gi|478247035|ref|NP_001264448.1| | general transcription factor IIH subunit 3 [Gallus gallus] | 1.0e-25 |
| pfu_aug2.0_16567.1_26513.t1 | gi|542165909|ref|XP_005491560.1| | PREDICTED: general transcription factor IIH subunit 3 isoform X1 [Zonotrichia albicollis] | 6.0e-25 |
| pfu_aug2.0_16567.1_26513.t1 | gi|525015270|ref|XP_005055217.1| | PREDICTED: general transcription factor IIH subunit 3 isoform X1 [Ficedula albicollis] | 2.0e-24 |
| pfu_aug2.0_16567.1_26513.t1 | gi|198432365|ref|XP_002120803.1| | PREDICTED: general transcription factor IIH subunit 3-like [Ciona intestinalis] | 8.0e-24 |
Transcript
| Transcript ID | pfu_aug2.0_16567.1_26513.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_16567.1_26513.t1 atgaagccgtttccagtcagcttgtcattgtacttgatacaaatccagtctggtggggtcaaaggtcaaacccaggtgat attggccagtttggtttatcagaatgcctggactgtctgatggtatttgctaattctcatctcatgatgagtcatacaaa taaactggttgtcatggcagcacattcgaatgaaagtgtctttctgtatccaaaacctgcacaaaaatcagtcaccatgg aaatagatttggttgatgatgaagctaatccaaacggtgatggacgatatgaactttttacacagctagatgatcaaatt aaaaacggtgtcaaagatcttgtacaaagag |
|
Protein
| Protein ID | pfu_aug2.0_16567.1_26513.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_16567.1_26513.t1 EAVSSQLVIVLDTNPVWWGQRSNPGDIGQFGLSECLDCLMVFANSHLMMSHTNKLVVMAAHSNESVFLYPKPAQKSVTME IDLVDDEANPNGDGRYELFTQLDDQIKNGVKDLVQR |
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