Gene
| Gene Model ID | pfu_aug2.0_1574.1_15125 |
|---|---|
| Locus | scaffold1574.1 : 131376 ... 134967 : + |
| To GenomeBrowser | scaffold1574.1:131376..134967 |
| Genes list of scaffold | scaffold1574.1 |
| Synonym | NA |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| leucine rich repeat protein | GO:0007165 GO:0048513 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1574.1_15125.t1 | 12 | 1 | LRR_1 | 56 | 73 | 2.5e-14 | 51.0 | 7.4e-05 | 0.14 | 12.2 |
| pfu_aug2.0_1574.1_15125.t1 | 6 | 1 | LRR_8 | 57 | 111 | 7.0e-32 | 108.9 | 1.0e-10 | 1.9e-07 | 30.7 |
| pfu_aug2.0_1574.1_15125.t1 | 7 | 1 | LRR_4 | 57 | 90 | 6.7e-22 | 76.6 | 0.00023 | 0.43 | 10.2 |
| pfu_aug2.0_1574.1_15125.t1 | 12 | 2 | LRR_1 | 75 | 95 | 2.5e-14 | 51.0 | 0.00035 | 0.65 | 10.2 |
| pfu_aug2.0_1574.1_15125.t1 | 6 | 2 | LRR_8 | 103 | 151 | 7.0e-32 | 108.9 | 1.1e-05 | 0.02 | 14.6 |
| pfu_aug2.0_1574.1_15125.t1 | 7 | 2 | LRR_4 | 103 | 139 | 6.7e-22 | 76.6 | 1.3e-08 | 2.4e-05 | 23.8 |
| pfu_aug2.0_1574.1_15125.t1 | 12 | 3 | LRR_1 | 103 | 120 | 2.5e-14 | 51.0 | 0.013 | 25.0 | 5.4 |
| pfu_aug2.0_1574.1_15125.t1 | 12 | 4 | LRR_1 | 124 | 145 | 2.5e-14 | 51.0 | 0.012 | 22.0 | 5.5 |
| pfu_aug2.0_1574.1_15125.t1 | 6 | 3 | LRR_8 | 165 | 203 | 7.0e-32 | 108.9 | 3.7e-06 | 0.0069 | 16.1 |
| pfu_aug2.0_1574.1_15125.t1 | 7 | 3 | LRR_4 | 170 | 201 | 6.7e-22 | 76.6 | 0.0088 | 16.0 | 5.2 |
| pfu_aug2.0_1574.1_15125.t1 | 12 | 5 | LRR_1 | 170 | 189 | 2.5e-14 | 51.0 | 0.17 | 310.0 | 2.0 |
| pfu_aug2.0_1574.1_15125.t1 | 6 | 4 | LRR_8 | 208 | 250 | 7.0e-32 | 108.9 | 0.007 | 13.0 | 5.6 |
| pfu_aug2.0_1574.1_15125.t1 | 7 | 4 | LRR_4 | 208 | 245 | 6.7e-22 | 76.6 | 0.006 | 11.0 | 5.7 |
| pfu_aug2.0_1574.1_15125.t1 | 12 | 6 | LRR_1 | 209 | 224 | 2.5e-14 | 51.0 | 4.2 | 7800.0 | -2.2 |
| pfu_aug2.0_1574.1_15125.t1 | 12 | 7 | LRR_1 | 234 | 251 | 2.5e-14 | 51.0 | 0.57 | 1100.0 | 0.4 |
| pfu_aug2.0_1574.1_15125.t1 | 7 | 5 | LRR_4 | 263 | 295 | 6.7e-22 | 76.6 | 6.5e-05 | 0.12 | 12.0 |
| pfu_aug2.0_1574.1_15125.t1 | 12 | 8 | LRR_1 | 263 | 273 | 2.5e-14 | 51.0 | 8.0 | 15000.0 | -3.2 |
| pfu_aug2.0_1574.1_15125.t1 | 6 | 5 | LRR_8 | 267 | 315 | 7.0e-32 | 108.9 | 3.0e-09 | 5.5e-06 | 26.0 |
| pfu_aug2.0_1574.1_15125.t1 | 12 | 9 | LRR_1 | 280 | 301 | 2.5e-14 | 51.0 | 0.011 | 20.0 | 5.7 |
| pfu_aug2.0_1574.1_15125.t1 | 7 | 6 | LRR_4 | 299 | 319 | 6.7e-22 | 76.6 | 0.00062 | 1.1 | 8.8 |
| pfu_aug2.0_1574.1_15125.t1 | 6 | 6 | LRR_8 | 305 | 362 | 7.0e-32 | 108.9 | 3.9e-13 | 7.3e-10 | 38.4 |
| pfu_aug2.0_1574.1_15125.t1 | 12 | 10 | LRR_1 | 305 | 325 | 2.5e-14 | 51.0 | 0.002 | 3.6 | 7.9 |
| pfu_aug2.0_1574.1_15125.t1 | 7 | 7 | LRR_4 | 327 | 363 | 6.7e-22 | 76.6 | 2.5e-09 | 4.6e-06 | 26.1 |
| pfu_aug2.0_1574.1_15125.t1 | 12 | 11 | LRR_1 | 329 | 348 | 2.5e-14 | 51.0 | 0.0022 | 4.1 | 7.8 |
| pfu_aug2.0_1574.1_15125.t1 | 12 | 12 | LRR_1 | 351 | 364 | 2.5e-14 | 51.0 | 0.072 | 130.0 | 3.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1574.1_15125.t1 | gi|759126975|ref|XP_011360875.1| | PREDICTED: leucine-rich repeat-containing G-protein coupled receptor 4 isoform X3 [Pteropus vampyrus] | 8.0e-25 |
Transcript
| Transcript ID | pfu_aug2.0_1574.1_15125.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1574.1_15125.t1 atggttttgagtatgatagggtttcttcaattagtacaagccgactggccttgtctattcgccaagccctgtgtatgtga ttataactacaggtccgtccactgtacgaaccagggactgacaggcatcccaccctatatcaacttcattgaaggcatgt ggtctatggacttcagtaataacaatttaactcatttgcccaaagatagttttggaaatataagtttgaatacactaaaa ctatccaacaacaacttgaaaaccatagaagacggagcgctcaaatccagtgagacttccatgttcaccttgagtttgga tggaaacatgttggaaacacttccaaaggaagttggtaagctaccaggtctatatgaacttcacttagacggtaatccca tgaaaagttttgatgccgacgttctgggcaacctcggccgtctcagtactttctcgtttggatctcctcaaatgactcag tggccgacagtagtgaacaagctctcaaacctttctgatctgacaataagaaattcagctatagagacgattccagacga tgctttcttgttgttgaagaatgtatacaccctaaccctgacctccactagtcaccaaacagaactacgtcagttctata taaatggcggtgccctagaaacgctaccaccaatttttacagaaatgtctgttttggccatcttctctttaacaaatact ccacttcggtacatcaatgacagtgttttccctaagaatttcagcaacatattcaacgaatttgatagtgacaattcttt atttgagagcgtacctcatattttatcaaaagtaaattctctatccaccatcaagcttaccaacaataaactaacatata ttaatgagacagacttttccggaaatagtcagttgttttggctccatctgtcaagtaatcctatcacggggatttctgat gatgcctttaagcacaatcctactttgtactatctttacctggacaacaccgagctgacaaccatacccaaggccataaa gaacataaacaaactaagcagtcttgatctcacaaacactaaaatacagtgtacgtgtaatgggttagattggatgaaat actggaagccacctaaaaactttaacattcttggtggttgctttaacaatgagatgacactatcggactatgtaaaatat gttattccgaaatgttaa |
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Protein
| Protein ID | pfu_aug2.0_1574.1_15125.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1574.1_15125.t1 MVLSMIGFLQLVQADWPCLFAKPCVCDYNYRSVHCTNQGLTGIPPYINFIEGMWSMDFSNNNLTHLPKDSFGNISLNTLK LSNNNLKTIEDGALKSSETSMFTLSLDGNMLETLPKEVGKLPGLYELHLDGNPMKSFDADVLGNLGRLSTFSFGSPQMTQ WPTVVNKLSNLSDLTIRNSAIETIPDDAFLLLKNVYTLTLTSTSHQTELRQFYINGGALETLPPIFTEMSVLAIFSLTNT PLRYINDSVFPKNFSNIFNEFDSDNSLFESVPHILSKVNSLSTIKLTNNKLTYINETDFSGNSQLFWLHLSSNPITGISD DAFKHNPTLYYLYLDNTELTTIPKAIKNINKLSSLDLTNTKIQCTCNGLDWMKYWKPPKNFNILGGCFNNEMTLSDYVKY VIPKC |
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