Gene
| Gene Model ID | pfu_aug2.0_1524.1_15082 |
|---|---|
| Locus | scaffold1524.1 : 133402 ... 146875 : - |
| To GenomeBrowser | scaffold1524.1:133402..146875 |
| Genes list of scaffold | scaffold1524.1 |
| Synonym | pfu_aug1.0_4162.1_66900 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| transcription factor ap-4 | GO:0000978 GO:0001077 GO:0005634 GO:0006461 GO:0017053 GO:0042826 GO:0045892 GO:0045944 GO:0070888 GO:0071549 GO:2001269 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1524.1_15082.t1 | 3 | 1 | HLH | 48 | 99 | 1.5e-16 | 59.8 | 2.0e-20 | 1.5e-16 | 59.8 |
| pfu_aug2.0_1524.1_15082.t1 | 3 | 2 | HLH | 167 | 175 | 1.5e-16 | 59.8 | 0.99 | 7400.0 | -3.3 |
| pfu_aug2.0_1524.1_15082.t1 | 3 | 3 | HLH | 243 | 254 | 1.5e-16 | 59.8 | 0.7 | 5200.0 | -2.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1524.1_15082.t1 | gi|625289572|ref|XP_007636539.1| | PREDICTED: transcription factor AP-4 [Cricetulus griseus] | 1.4013e-45 |
| pfu_aug2.0_1524.1_15082.t1 | gi|354488493|ref|XP_003506403.1| | PREDICTED: transcription factor AP-4 [Cricetulus griseus] | 1.4013e-45 |
| pfu_aug2.0_1524.1_15082.t1 | gi|532011010|ref|XP_005349302.1| | PREDICTED: transcription factor AP-4 [Microtus ochrogaster] | 5.60519e-45 |
| pfu_aug2.0_1524.1_15082.t1 | gi|157818505|ref|NP_001101737.1| | transcription factor AP-4 [Rattus norvegicus] | 8.40779e-45 |
| pfu_aug2.0_1524.1_15082.t1 | gi|589944123|ref|XP_006984758.1| | PREDICTED: transcription factor AP-4 [Peromyscus maniculatus bairdii] | 9.80909e-45 |
Transcript
| Transcript ID | pfu_aug2.0_1524.1_15082.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1524.1_15082.t1 atgtgtagtatgacaaattatttcagaagtactgatagaagaagaattctgtcggatttatccatgcaacaagaagattt atcagctgttttcgagagacacacatccatgccgacccatgttgaacaagagaagaaggtccgtagggagatagctaaca gtaacgagaggagaaggatgcagagtataaatgctggattccaatctctcaagaacctgatccctcaccaggaaggagaa aaactcagcaaggctgccatacttcagcagacagcttcatatatccatcagctggagaaggagaagacacgacttctgac acacaataatgaacttagcatgcaactgaagcatctccttggtaacaacctcgactcgtactcacctccaacaaaacgga agaaacgtgacacagaatcctctgatgaaggtattactgccgactatgatgatgtcaacgagatcaagagagaaatgatt gaactgcgctgccagctagaaagggaaagacaactgcgtatgcgtttggaagggcaaactgaggcttatgactctcaggt ttaccatatccaaaaatcaccagagccaaaacagtatgcatccaatatgcaagcccagatggagaaagataaaattatct acatggagcaaataaagaaagaagaagaggaagaaaaattaagaaatgattcgagttcggagacagaatcaatgtcccga cgaaatctggaaacgatagtggaagccatacgtcatttagaaggagacagactggaagaaggaaatcatcatagctccat agtacatagtgaagaaagtgaaaaggaaagtagtgagactgaagacaaccgatcagaactgtctgaccatgattcaccat tacaatacatacaagtgatggaggacaatagacaatcaactcttacagagctccatccctatcaacattcatatcctaac ttactacatcatactaacctggtacaatactattgtcgacctaacgttatcgtccaaaaatcatag |
|
Protein
| Protein ID | pfu_aug2.0_1524.1_15082.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1524.1_15082.t1 MCSMTNYFRSTDRRRILSDLSMQQEDLSAVFERHTSMPTHVEQEKKVRREIANSNERRRMQSINAGFQSLKNLIPHQEGE KLSKAAILQQTASYIHQLEKEKTRLLTHNNELSMQLKHLLGNNLDSYSPPTKRKKRDTESSDEGITADYDDVNEIKREMI ELRCQLERERQLRMRLEGQTEAYDSQVYHIQKSPEPKQYASNMQAQMEKDKIIYMEQIKKEEEEEKLRNDSSSETESMSR RNLETIVEAIRHLEGDRLEEGNHHSSIVHSEESEKESSETEDNRSELSDHDSPLQYIQVMEDNRQSTLTELHPYQHSYPN LLHHTNLVQYYCRPNVIVQKS |
|