Gene
| Gene Model ID | pfu_aug2.0_1470.1_01654 |
|---|---|
| Locus | scaffold1470.1 : 153466 ... 155669 : + |
| To GenomeBrowser | scaffold1470.1:153466..155669 |
| Genes list of scaffold | scaffold1470.1 |
| Synonym | pfu_aug1.0_13951.1_46694 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1470.1_01654.t1 | 3 | 1 | zf-C3HC4_3 | 11 | 64 | 1.9e-07 | 30.6 | 1.3e-10 | 1.9e-07 | 30.6 |
| pfu_aug2.0_1470.1_01654.t1 | 3 | 1 | zf-RING_5 | 12 | 61 | 3.4e-09 | 36.2 | 2.3e-12 | 3.4e-09 | 36.2 |
| pfu_aug2.0_1470.1_01654.t1 | 3 | 1 | zf-RING_2 | 12 | 60 | 7.3e-09 | 35.3 | 4.9e-12 | 7.3e-09 | 35.3 |
| pfu_aug2.0_1470.1_01654.t1 | 3 | 1 | zf-C3HC4 | 13 | 59 | 3.8e-09 | 36.0 | 2.5e-12 | 3.8e-09 | 36.0 |
| pfu_aug2.0_1470.1_01654.t1 | 1 | 1 | zf-RING_UBOX | 13 | 57 | 3.9e-08 | 32.8 | 9.6e-11 | 1.4e-07 | 31.0 |
| pfu_aug2.0_1470.1_01654.t1 | 3 | 1 | zf-C3HC4_2 | 13 | 59 | 6.4e-08 | 32.5 | 4.3e-11 | 6.4e-08 | 32.5 |
| pfu_aug2.0_1470.1_01654.t1 | 3 | 1 | zf-C3HC4_4 | 13 | 59 | 8.5e-06 | 25.5 | 5.7e-09 | 8.5e-06 | 25.5 |
| pfu_aug2.0_1470.1_01654.t1 | 4 | 1 | zf-B_box | 28 | 37 | 1.5e-06 | 28.0 | 5.1 | 7600.0 | -3.1 |
| pfu_aug2.0_1470.1_01654.t1 | 4 | 2 | zf-B_box | 56 | 60 | 1.5e-06 | 28.0 | 3.5 | 5100.0 | -2.6 |
| pfu_aug2.0_1470.1_01654.t1 | 3 | 2 | zf-C3HC4 | 100 | 121 | 3.8e-09 | 36.0 | 10.0 | 15000.0 | -5.1 |
| pfu_aug2.0_1470.1_01654.t1 | 3 | 2 | zf-RING_5 | 102 | 134 | 3.4e-09 | 36.2 | 0.017 | 26.0 | 4.6 |
| pfu_aug2.0_1470.1_01654.t1 | 3 | 2 | zf-C3HC4_3 | 102 | 132 | 1.9e-07 | 30.6 | 1.2 | 1700.0 | -1.3 |
| pfu_aug2.0_1470.1_01654.t1 | 3 | 2 | zf-C3HC4_2 | 105 | 133 | 6.4e-08 | 32.5 | 0.48 | 710.0 | 0.3 |
| pfu_aug2.0_1470.1_01654.t1 | 4 | 3 | zf-B_box | 115 | 146 | 1.5e-06 | 28.0 | 2.3e-07 | 0.00035 | 20.4 |
| pfu_aug2.0_1470.1_01654.t1 | 3 | 2 | zf-RING_2 | 117 | 132 | 7.3e-09 | 35.3 | 2.5 | 3700.0 | -2.2 |
| pfu_aug2.0_1470.1_01654.t1 | 3 | 2 | zf-C3HC4_4 | 117 | 129 | 8.5e-06 | 25.5 | 4.9 | 7300.0 | -3.1 |
| pfu_aug2.0_1470.1_01654.t1 | 4 | 4 | zf-B_box | 162 | 193 | 1.5e-06 | 28.0 | 8.2e-08 | 0.00012 | 21.8 |
| pfu_aug2.0_1470.1_01654.t1 | 3 | 3 | zf-C3HC4_2 | 163 | 189 | 6.4e-08 | 32.5 | 10.0 | 15000.0 | -6.7 |
| pfu_aug2.0_1470.1_01654.t1 | 3 | 3 | zf-RING_2 | 174 | 194 | 7.3e-09 | 35.3 | 0.36 | 530.0 | 0.5 |
| pfu_aug2.0_1470.1_01654.t1 | 3 | 3 | zf-RING_5 | 176 | 196 | 3.4e-09 | 36.2 | 10.0 | 15000.0 | -4.5 |
| pfu_aug2.0_1470.1_01654.t1 | 3 | 3 | zf-C3HC4 | 182 | 186 | 3.8e-09 | 36.0 | 10.0 | 15000.0 | -7.4 |
| pfu_aug2.0_1470.1_01654.t1 | 3 | 3 | zf-C3HC4_3 | 182 | 188 | 1.9e-07 | 30.6 | 10.0 | 15000.0 | -6.7 |
| pfu_aug2.0_1470.1_01654.t1 | 3 | 3 | zf-C3HC4_4 | 182 | 188 | 8.5e-06 | 25.5 | 4.4 | 6500.0 | -2.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1470.1_01654.t1 | gi|291223764|ref|XP_002731878.1| | PREDICTED: E3 ubiquitin-protein ligase TRIM71-like [Saccoglossus kowalevskii] | 1.0e-27 |
| pfu_aug2.0_1470.1_01654.t1 | gi|291234819|ref|XP_002737346.1| | PREDICTED: tripartite motif-containing protein 2-like [Saccoglossus kowalevskii] | 4.0e-26 |
| pfu_aug2.0_1470.1_01654.t1 | gi|585645351|ref|XP_006811545.1| | PREDICTED: E3 ubiquitin-protein ligase TRIM56-like [Saccoglossus kowalevskii] | 1.0e-25 |
| pfu_aug2.0_1470.1_01654.t1 | gi|260815444|ref|XP_002602483.1| | hypothetical protein BRAFLDRAFT_86868 [Branchiostoma floridae] | 6.0e-24 |
Transcript
| Transcript ID | pfu_aug2.0_1470.1_01654.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1470.1_01654.t1 atggcggaggcacactcggtagacgatttaacacactgccccatctgctttgaaaagtatgatagaccaagatacctacc ttgcctgcatacattctgtgagaaatgcttacaaacgtatattgatacaactgtcggaaacgattctaaaacggagggtt tcaactgcccaacttgtcgacgactcatagaggtccctgcgagtgaggatgtgcaatggggtaatatggcagagacgttt ccattgaatcacttgattgtaactttaatggatattacgttatccgcagaaactttgaaattttgtgggccatgtagaaa gagatccatagaggtgccgccgatgtcctggtgtaaagattgtaaaaagtttctatgtggacaatgtgtggaatatcata agactttgccgattcttgaagggcacctcattgaaactctgaaagacatcaatgaggtcgatgttatttctacaccgaca tttcattgtgaaaaacatccagataaaaaactagaaatgttttgtgaagatcatgatattccttgctgtatgtcctgcac aatgattgagcatagaaaatgtgaaaaagttgaaacactagaaaaagctgctaaacgcaagaatttgtctttaatgaggg aagaaatcacagagagattttccaatgttcttgaaagcttgaatgaaagaattaagatgaaaacggattcatttaatgat ttcaatgaccagtgtgatgaaatgaaacataaagtacaggaaacaacggagggaataacgatgcatgtcaaacatctgtg ctcaaatgcattaacagagctatcgacaatcaaagagaaacaagaactccttcacatttcggatattgaactgttgaaag aacaaaaagtctccattgaacgataccaaaatctgctgacagcgaacgaaaaggacacgtctgatgtgcaatcctttatg gagatgcgaagattaaaagaacacatagaagacattcctaaggagcaggtgatgtcaaataagtactgtgaactgaattt tgaaattgacaatgatgttttagacatcatgaaagtagaaacgttactacaacccaaacgacaagaacattcaaatacaa gcgatgataatgcatcactaagcaaatgtgaatataaatcatttgaatatatgcgtactttgaattttagagacagaaaa aagaacatttctgtcaataattgtgtctttcttgaaaatggtggtcttttgctcgtagattacagaaatgcggaatctcg gaatggttttgtaagactatataactcggaattgaccatgttccataccatacgtctaatgggtaaaccatgggctgctg tagaagtagacgtgaactcttatatcataacaattccttccaacaacacaatttgttacttagagacagaaagatactcc acaatagaagctttttatcaagaatcttcaactttttatgagaattctggaaggaaatttttcggtatcgctatgaagga caagccatctacaacaagcatagaaagagaagccactttctatgtctcttcaaggggagaagtgcatttgagaacccgct ccggatgtactctgcagaaacttaatctatccacaacatatatccaacacatcagttacaaagatggcgcaatttatttt agcgcgaaggatagtctgtattgtgtagatgaagatggaaataccatatttgaatttaatgatccgactcttcttcaggg tgcctctggatcgtccgttggttacaacggagatatcgctgtctgtggtagaaaatctgatcttgttgttatcattgata gattcggtaaaaggaaaaccgaagtagcagtaaattctccaacctgcgttgcattcagttcagattgttacaaaatgtgt gtcgtacgaggaggcacacatatagacaatttaggtgcaatatttgaaattgaatataacaattga |
|
Protein
| Protein ID | pfu_aug2.0_1470.1_01654.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1470.1_01654.t1 MAEAHSVDDLTHCPICFEKYDRPRYLPCLHTFCEKCLQTYIDTTVGNDSKTEGFNCPTCRRLIEVPASEDVQWGNMAETF PLNHLIVTLMDITLSAETLKFCGPCRKRSIEVPPMSWCKDCKKFLCGQCVEYHKTLPILEGHLIETLKDINEVDVISTPT FHCEKHPDKKLEMFCEDHDIPCCMSCTMIEHRKCEKVETLEKAAKRKNLSLMREEITERFSNVLESLNERIKMKTDSFND FNDQCDEMKHKVQETTEGITMHVKHLCSNALTELSTIKEKQELLHISDIELLKEQKVSIERYQNLLTANEKDTSDVQSFM EMRRLKEHIEDIPKEQVMSNKYCELNFEIDNDVLDIMKVETLLQPKRQEHSNTSDDNASLSKCEYKSFEYMRTLNFRDRK KNISVNNCVFLENGGLLLVDYRNAESRNGFVRLYNSELTMFHTIRLMGKPWAAVEVDVNSYIITIPSNNTICYLETERYS TIEAFYQESSTFYENSGRKFFGIAMKDKPSTTSIEREATFYVSSRGEVHLRTRSGCTLQKLNLSTTYIQHISYKDGAIYF SAKDSLYCVDEDGNTIFEFNDPTLLQGASGSSVGYNGDIAVCGRKSDLVVIIDRFGKRKTEVAVNSPTCVAFSSDCYKMC VVRGGTHIDNLGAIFEIEYNN |
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