Gene
| Gene Model ID | pfu_aug2.0_1470.1_01651 |
|---|---|
| Locus | scaffold1470.1 : 92176 ... 108787 : + |
| To GenomeBrowser | scaffold1470.1:92176..108787 |
| Genes list of scaffold | scaffold1470.1 |
| Synonym | pfu_aug1.0_21322.1_47442 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| ras-related protein rab-4b | GO:0005525 GO:0007264 GO:0008152 GO:0015031 GO:0016787 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1470.1_01651.t1 | 1 | 1 | Arf | 55 | 217 | 3.7e-15 | 55.5 | 4.5e-18 | 4.8e-15 | 55.2 |
| pfu_aug2.0_1470.1_01651.t1 | 1 | 1 | Ras | 61 | 221 | 0.0 | 199.0 | 0.0 | 0.0 | 198.7 |
| pfu_aug2.0_1470.1_01651.t1 | 1 | 1 | Miro | 61 | 175 | 8.4e-21 | 74.6 | 1.2e-23 | 1.3e-20 | 74.0 |
| pfu_aug2.0_1470.1_01651.t1 | 1 | 1 | Gtr1_RagA | 61 | 181 | 4.7e-06 | 25.9 | 6.1e-09 | 6.4e-06 | 25.4 |
| pfu_aug2.0_1470.1_01651.t1 | 1 | 1 | GTP_EFTU | 95 | 214 | 2.5e-06 | 27.0 | 1.2e-08 | 1.3e-05 | 24.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1470.1_01651.t1 | gi|676485391|ref|XP_009063643.1| | hypothetical protein LOTGIDRAFT_177521 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_1470.1_01651.t1 | gi|524899817|ref|XP_005106335.1| | PREDICTED: ras-related protein Rab-4B-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_1470.1_01651.t1 | gi|573878926|ref|XP_006627686.1| | PREDICTED: ras-related protein Rab-4B-like [Lepisosteus oculatus] | 0.0 |
| pfu_aug2.0_1470.1_01651.t1 | gi|597798844|ref|XP_007260962.1| | PREDICTED: ras-related protein Rab-4B-like [Astyanax mexicanus] | 0.0 |
| pfu_aug2.0_1470.1_01651.t1 | gi|637317718|ref|XP_008112041.1| | PREDICTED: ras-related protein Rab-4B [Anolis carolinensis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_1470.1_01651.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1470.1_01651.t1 atgcatcttgcacttgaggggcaagttgaggaacaattgcctgggggaaattattatgagccttcgttgagcgatcaaac taggggagcatcagtaccaactaccaacacatactctgagagtgactttgcccaattcaacatacttatacgtatgacac cctcagcaaattttctgttcaagttccttgtaataggaagtgcaggaacgggaaagtcatgtattctgcatcagttcata gaaaacaaattcaagcaggattcaaatcacacaattggagtagaatttggaagtaaagttgtaaatgttggaggaaaatc ggtcaaactacaaatatgggatacagctggtcaggaaaggtttagatctgtaacaaggagttattatagaggtgccgctg gtgcccttttagtttacgatatcacaagtcgagagacttacaatgccctgacaaattggttaacagacgccagaacactg gcaagtccgaacatagtgattattttagtgggtaataaaagtgatttggagacagagagagaagtcacatttctcgaagc cagcagatttgcacaagaaaacgaactcatgtttttagaaacaagtgctttaacaggagaaaatgtagaggaaacatttt tgaagtgtgcacgacaaattttaactaagattgaattaggtgaacttgacccagaaaggatgggatcagggatccaatac ggtgacacatccatgaggcggatccagaaagatacatcggcaatacgcaaaccagactgtgcttgttag |
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Protein
| Protein ID | pfu_aug2.0_1470.1_01651.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1470.1_01651.t1 MHLALEGQVEEQLPGGNYYEPSLSDQTRGASVPTTNTYSESDFAQFNILIRMTPSANFLFKFLVIGSAGTGKSCILHQFI ENKFKQDSNHTIGVEFGSKVVNVGGKSVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARTL ASPNIVIILVGNKSDLETEREVTFLEASRFAQENELMFLETSALTGENVEETFLKCARQILTKIELGELDPERMGSGIQY GDTSMRRIQKDTSAIRKPDCAC |
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