Gene
| Gene Model ID | pfu_aug2.0_1449.1_31692 |
|---|---|
| Locus | scaffold1449.1 : 107362 ... 138725 : - |
| To GenomeBrowser | scaffold1449.1:107362..138725 |
| Genes list of scaffold | scaffold1449.1 |
| Synonym | pfu_aug1.0_14457.1_18128 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1449.1_31692.t1 | 1 | 1 | P4Ha_N | 29 | 173 | 5.7e-23 | 81.2 | 7.4e-27 | 1.1e-22 | 80.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1449.1_31692.t1 | gi|667332472|ref|XP_008591938.1| | PREDICTED: prolyl 4-hydroxylase subunit alpha-2 isoform X3 [Galeopterus variegatus] | 3.0e-39 |
| pfu_aug2.0_1449.1_31692.t1 | gi|752380958|ref|XP_011222394.1| | PREDICTED: prolyl 4-hydroxylase subunit alpha-2 isoform X3 [Ailuropoda melanoleuca] | 7.0e-39 |
| pfu_aug2.0_1449.1_31692.t1 | gi|625191123|ref|XP_003499425.2| | PREDICTED: prolyl 4-hydroxylase subunit alpha-2 isoform X3 [Cricetulus griseus] | 4.0e-38 |
| pfu_aug2.0_1449.1_31692.t1 | gi|670997968|ref|XP_008689865.1| | PREDICTED: prolyl 4-hydroxylase subunit alpha-2 isoform X3 [Ursus maritimus] | 5.0e-38 |
Transcript
| Transcript ID | pfu_aug2.0_1449.1_31692.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1449.1_31692.t1 atggctccgattttgacaatcaaatactttatactctacatcacatacagtactgtactacaatttacatacggggaatt ttacacttcagtttacaaactttcattactgatatcagaggaacagagactaatcaaagctttgaagaaatacattgcag aggaagaaagcaacgacaatacaatagaacacgaactttacagtattttacagaatgccgaagatgaacagtctcagata gctaatccggaactttacccacagaatccaatcaacgccttccatctcatataccggatacaacgggactggcccaaagt acacagtatcatattttgcgacacgtgtgaacttgacaatagtgccaaagattttgatctaagttatcacgttgctgaga ggcatttagatggccttccatcagatgctgacgtggaaggtgctaccaacagcattatacgtctttggaacgtttaccaa ttctctttgaaggacttcttcgatggtgttatatttggaacggaaacgaaaccacttagtgtaaaagaaattctttatat tgcaagaaaagctgatgtaaatgacaatttgtacgaagctttccattggctcaacgaactctataggcgattcaaaaatg gagaatactcaaattcaggtgtgactgttgaaacggttgcaaaaactttggccggagtctataataggaatggaatgcct gataaatctttggaaatactagaggatttcaaacaagtggatgttttgctgttggtgctgcaatcaagttcaagtaaagc cttggctcagctttattgctattggagaacatcagcaattccgtacctgcttgtcaaagaggaagttgtcaacaacaacc ccaaaataactctcttccatgacgtcattaatgacgcggaaattcgtttcttacaaaatattagttcgagcaagatagag agatcagccgtgttgagatctttcgatggccgggtagcgggaggagccttgactgaaggaagggtcagtcaaacggcatg gttgtcagactttgaataccctcttctacgtaagctggctaaacgaattgagattataactggtatggctactgaacaca aacacagattttgtgagagcgaggaataccagggtgcagcagcattctggtacaattttaaacgtaatggagatcaagat tttgatacacaacacgcagggtgtcctgtccttttagggtcgaagtgggtgagtaacaaatggttacgagaggagggaca aatgctaagaagaaagtgtggactggataaagacgccatagatactgtatattctaatgacctaaatgctcagtggttat cataa |
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Protein
| Protein ID | pfu_aug2.0_1449.1_31692.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1449.1_31692.t1 MAPILTIKYFILYITYSTVLQFTYGEFYTSVYKLSLLISEEQRLIKALKKYIAEEESNDNTIEHELYSILQNAEDEQSQI ANPELYPQNPINAFHLIYRIQRDWPKVHSIIFCDTCELDNSAKDFDLSYHVAERHLDGLPSDADVEGATNSIIRLWNVYQ FSLKDFFDGVIFGTETKPLSVKEILYIARKADVNDNLYEAFHWLNELYRRFKNGEYSNSGVTVETVAKTLAGVYNRNGMP DKSLEILEDFKQVDVLLLVLQSSSSKALAQLYCYWRTSAIPYLLVKEEVVNNNPKITLFHDVINDAEIRFLQNISSSKIE RSAVLRSFDGRVAGGALTEGRVSQTAWLSDFEYPLLRKLAKRIEIITGMATEHKHRFCESEEYQGAAAFWYNFKRNGDQD FDTQHAGCPVLLGSKWVSNKWLREEGQMLRRKCGLDKDAIDTVYSNDLNAQWLS |
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