Gene
| Gene Model ID | pfu_aug2.0_1443.1_11671 |
|---|---|
| Locus | scaffold1443.1 : 140906 ... 143405 : - |
| To GenomeBrowser | scaffold1443.1:140906..143405 |
| Genes list of scaffold | scaffold1443.1 |
| Synonym | pfu_aug1.0_962.1_58322 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1443.1_11671.t1 | 2 | 1 | zf-C3HC4_3 | 13 | 67 | 2.2e-06 | 27.2 | 1.6e-09 | 2.2e-06 | 27.2 |
| pfu_aug2.0_1443.1_11671.t1 | 4 | 1 | zf-C3HC4 | 15 | 59 | 1.8e-08 | 33.8 | 1.3e-11 | 1.8e-08 | 33.8 |
| pfu_aug2.0_1443.1_11671.t1 | 3 | 1 | zf-RING_2 | 15 | 63 | 5.9e-07 | 29.2 | 4.3e-10 | 5.9e-07 | 29.2 |
| pfu_aug2.0_1443.1_11671.t1 | 4 | 2 | zf-C3HC4 | 59 | 81 | 1.8e-08 | 33.8 | 0.24 | 320.0 | 1.0 |
| pfu_aug2.0_1443.1_11671.t1 | 2 | 1 | zf-B_box | 100 | 146 | 1.4e-08 | 34.4 | 4.4e-08 | 6.0e-05 | 22.8 |
| pfu_aug2.0_1443.1_11671.t1 | 2 | 2 | zf-C3HC4_3 | 103 | 135 | 2.2e-06 | 27.2 | 0.34 | 450.0 | 0.6 |
| pfu_aug2.0_1443.1_11671.t1 | 4 | 3 | zf-C3HC4 | 104 | 136 | 1.8e-08 | 33.8 | 0.84 | 1100.0 | -0.7 |
| pfu_aug2.0_1443.1_11671.t1 | 3 | 2 | zf-RING_2 | 104 | 135 | 5.9e-07 | 29.2 | 1.2 | 1600.0 | -1.0 |
| pfu_aug2.0_1443.1_11671.t1 | 2 | 2 | zf-B_box | 162 | 193 | 1.4e-08 | 34.4 | 4.5e-09 | 6.1e-06 | 26.0 |
| pfu_aug2.0_1443.1_11671.t1 | 3 | 3 | zf-RING_2 | 179 | 196 | 5.9e-07 | 29.2 | 3.6 | 4900.0 | -2.6 |
| pfu_aug2.0_1443.1_11671.t1 | 4 | 4 | zf-C3HC4 | 183 | 188 | 1.8e-08 | 33.8 | 8.0 | 11000.0 | -3.9 |
Transcript
| Transcript ID | pfu_aug2.0_1443.1_11671.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1443.1_11671.t1 atggcggcttcaaacacatctccgtttaccgaacttaccttgtgtcctatttgctttgagggatttaaatgccccaaaac tctgccatgcttacataacttttgtgaatcgtgtatcggaagttatcttgcatcggtatttgagaaagaaaaagataaag ttaagtgtgtcagttgtcctatttgccgagcggacgttcaaaagccacaggacgtgaatacatcggaggaatggattaaa tgcctaccgacaaatcatatgttagtcagcatggtggatgctgttagtggttttcaagatgcaaacatttgcaatttatg tactatcgaaaacaaaaccgaaagtgcagtgtattggtgcgcggattgccggaaggccctatgtgaactttgcgagcgca gacatacatattttatgcaagggcacaaagttataaatgtgaagcaaatgactgatattgaaccaaaggcattgagtgtc agcgtcaagtgtccaaggcacgaagagaaagttatagaagcttattgctttgaccacaatgtcccttgttgttcatcgtg tgttatgattacccatcgtaaatgtagcagagtcgaagaagcaaaaattgcagcagaggaattaagaaactcgaaagaga tccttggattacaggaagattttgagattcatagaaagaaaatgggagagctgtcagacaaatctgctgaaaatgttaag ttattcaaggataaagtagccgacattcatgatgaaatcacaacgcttcgattagatataaacagacatttggacgaaat agaaatgaaagcaaaacaagaacttaatgctcttgaaaaagaacatgtaccagaaatggaagcagcagtacaaatgatgt caggagaaacaaaacgagcagagaatggtttgatgatgctgaaggcaagtgttcaatatgcttcagatgagcagttttta tgcgacattgaaaaaatgagaaatgaatcgaacaaaattaggaaaatttgggaacaaaacagaacaaagttcaattacaa gaagttgatctttgaaatgaatgatgagttaaagagtctaaaaaatgtccagaccttcatgcatgtaaacctcacagagg ataagatggtaatggaatcagatccagttgacctactccaggctgagccggtgaaagtatcacaatttgatatagatatc aattgttccaacattacaggatgtgtcatgattgatgacaaaagagtactgtttgcaacatattcacttaatcgtgttga tatgtatggaatagatgggacatacctgtcttgtcttaaccttggaaatcaggcctggggcgtcgatgttattgataaga atactggagttgcaactctgtggactgcaaagaaggtagttctgttttcaatcgatgatactaatctgaccctgctatac tccgtggattgttcctatggtaaagaaatatatggaattaaatgctacagtgaaagactctatgttggttctaaagacaa gattatcgttctcaatacggatggttcgcttattcaagaaataaaacagccatcgctgggttggatacgccacattagtg tttcagatgataaaattgtttacaccaatattagtgtagtacagtgtatcacactacgaggagaacgcgtcttccaattt tcatccaaggatctatctaatcctgagggaataagtactgatagtgacaataatatctatgtcattggtcaatcgtcaag aaatatcgtccaacttacccctcagggaaagcttcacagagttctactccaaaatgttcctcatggaaatatcaattctc tgttcttctgtagacaaactaatagacttgtgttcaacacagggaggactgtacatgtctatgagatgaagaggaagcag ttacaggctacatag |
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Protein
| Protein ID | pfu_aug2.0_1443.1_11671.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1443.1_11671.t1 MAASNTSPFTELTLCPICFEGFKCPKTLPCLHNFCESCIGSYLASVFEKEKDKVKCVSCPICRADVQKPQDVNTSEEWIK CLPTNHMLVSMVDAVSGFQDANICNLCTIENKTESAVYWCADCRKALCELCERRHTYFMQGHKVINVKQMTDIEPKALSV SVKCPRHEEKVIEAYCFDHNVPCCSSCVMITHRKCSRVEEAKIAAEELRNSKEILGLQEDFEIHRKKMGELSDKSAENVK LFKDKVADIHDEITTLRLDINRHLDEIEMKAKQELNALEKEHVPEMEAAVQMMSGETKRAENGLMMLKASVQYASDEQFL CDIEKMRNESNKIRKIWEQNRTKFNYKKLIFEMNDELKSLKNVQTFMHVNLTEDKMVMESDPVDLLQAEPVKVSQFDIDI NCSNITGCVMIDDKRVLFATYSLNRVDMYGIDGTYLSCLNLGNQAWGVDVIDKNTGVATLWTAKKVVLFSIDDTNLTLLY SVDCSYGKEIYGIKCYSERLYVGSKDKIIVLNTDGSLIQEIKQPSLGWIRHISVSDDKIVYTNISVVQCITLRGERVFQF SSKDLSNPEGISTDSDNNIYVIGQSSRNIVQLTPQGKLHRVLLQNVPHGNINSLFFCRQTNRLVFNTGRTVHVYEMKRKQ LQAT |
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