Gene
| Gene Model ID | pfu_aug2.0_1371.1_05002 |
|---|---|
| Locus | scaffold1371.1 : 127216 ... 134647 : + |
| To GenomeBrowser | scaffold1371.1:127216..134647 |
| Genes list of scaffold | scaffold1371.1 |
| Synonym | pfu_aug1.0_15.1_14687 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| integrase core domain protein | GO:0005488 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1371.1_05002.t1 | 2 | 1 | RVT_1 | 314 | 466 | 2.5e-18 | 66.2 | 3.0e-21 | 7.4e-18 | 64.6 |
| pfu_aug2.0_1371.1_05002.t1 | 1 | 1 | rve | 532 | 644 | 7.2e-26 | 90.6 | 8.6e-29 | 2.1e-25 | 89.1 |
| pfu_aug2.0_1371.1_05002.t1 | 2 | 2 | RVT_1 | 926 | 986 | 2.5e-18 | 66.2 | 1.5 | 3800.0 | -3.1 |
| pfu_aug2.0_1371.1_05002.t1 | 1 | 1 | BTB_2 | 944 | 1037 | 1.6e-10 | 41.0 | 2.9e-13 | 7.2e-10 | 38.9 |
Transcript
| Transcript ID | pfu_aug2.0_1371.1_05002.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1371.1_05002.t1 atggatagtttgaacgattcaggtgaaatcacattcaaaaacactacacaaaatatatattgtggcttggacaaatctcc aaatcctcccaactgtgtaggtgcaacacaatgcacaaatgccacaactcagtctgaaaatacaaatgaattattgtcat caattcatacattaattcagaatcaattttcgcaatttgataaagcaattaatgctcaattacatgaaatgaattgcaaa attgatggacagtttgaggaaatgcaaaatgctcttgatcaagttagaaatgaatcacaagtaagggaaaattcagattc aactccctataactgtactccacccccacgcatagactttgagggccccagtagcagacctcctttccctatacacaaca atacacatagcaacagaaatttttctagtgcaggtaatggggacaatgttaggtttactaattcaaacacacatctaggg catagtaccaatgtaaatagccaacaaaaatcaaatgcaaagcctaggaaatacgacggtaatgatgattttggtgaata cctttcccagtttgaaatcattgccgaaatcaatcaatgggactacaaaacaaaatccttgcaacttgcaggtgttctta cgggacaagcagtaggagtcctaggtgaacttagccctacgcaacgtagagactatgatacccttgttaatgctttaaat acaagatttgggtcccttgaacgtggtgaactctacagagctcgcttaaaggtcctaaaattagacaagggtcaaaatct ctcacagcttgcacaagaggtaaagaaactgacacgtcaggcttatcctcatgcaaatagaaatatgcttgacatattat cccttgattactacattgatgctttacctgacccagacatacgtttgcgcatcagggaatcaagacctcaaaacattact gaggctgagacattagctgtcagaaaacttaatgacgtcacatcaaaagatagtcatccaataccaaggattgacacgac tctagatgcactttcaggatcaaggttctattcgaccattgatctaaagagcggttactggcaagttaaagttgccgaag aagaccgtccaaaaactgcattttcaattcctgggggtggtcactggcagtttgtatcaatgccctttggcttatgcaat gcccccgcaacatttgagcgactcatggaaaaagtactagccaacttgtcttggcatatctgcatgatataccttgacga tatcattgttttatcaaagtcctttgatgaacatctagaaaacttggagcaagtgttttccaagcttcaaattgccaatt taaaaatgaacccaaagaaatgttactttctacaaaaagagggaaaccatgatagtgtgactggaggtcatttgggaatt aagaaaacacaaaataaaatcagagataaatacatgtggcaccaaatgtcaaaagatataaaacaatggtgtctaaattg tgacaagtgtgcttctagaaaagggtccactaaacagcctaaatctcccctacaaagaaatcttgtgggtgtcccaatgg agagaatagctgttgatgtattgggacccctcccattaagtaagaagaaaaattcttacttattagtggttggagatagc tttacaaaatggattgacgctattcctatcaaaaatcaaaaagcaacaactattgctcagaaaattattgaccgcattgt tacaatatttggcataccaatgcagattcattctgatcaaggtcgatcatttgagtcatccatttttcaagaaatgtgca atcttctcggaattgagaagacacgatctactccttacagaccacaatcaaatggcatgatagagcgagctaatcaaaca atagcaaatatgctaactgcatttgtgaacaaaaaccaaaatgattgggatgaattaatacctatactaatgatggccta caggtcttctgtacaagaatcaacaggtttctccagattcagatgtcgtctttgtggggacgcaaggcatttttcgtctc gccagcaagcggaaaggcatgtcgtaactatgcactctggatttgcatattcttgcaatcactgcaaacatctctccaac ttgaagtatgataaaaggcatacctgcgcagggggagcagaggccggcagatctttggttaaacgggcaacaatgacatg tacacccgaagaactgcaggagtataatgattacttcaaggtccgagcatctcacgtggaacagtacatggtagaacggg agatacccatgtctgacagaccatcaatgaaaggggccatggtaccaatcagaaagaggactatgccaacgaagcctcac cacatgggcaagaaaaagaaaacagttggaacagacaaccttgcaattacgatccagaacgtagcatctaatattaacac cccttctccagctgttcaggatttagcgttatcagaatctgaggaagagtctcctgatgttactatacaggtaacctgtg agtccagcagtaaggacttacaagctgaagtcactgaggatgatacagaccatgacgagatccaggtaaccgtagatgct tatggtgatgggtcacagacaagtaccgttattgaaccactccgcagagtgacttataatgatactttaatgcagactga ggcagtcagctgcaatgacatctctgcacagactgatgatcaaggcaagcataatcaccacaatgctgcacagaaactaa gggaccttgcgaagagtcagcaaaccaaagttatcttgcagattggcaatgaatccttcacgacaagtgcaagtatctta agtaaggaagaatcagttctgtcaagaatgatcaagaaacattcacccctgcaaccttactttactcacaagatcatgac ttacagcatcgatcgtgatccatcagccttttcatacatcttggattatctgagggtaggttcagaggaatgcatatccc tgctgcctaacaacatgcgagaacttagacgactctacatggaagcctccttctacgagctgacaggattaaccagcctt ctggagaagaaagtgctaaatcaactaaaaggactgtaa |
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Protein
| Protein ID | pfu_aug2.0_1371.1_05002.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1371.1_05002.t1 MDSLNDSGEITFKNTTQNIYCGLDKSPNPPNCVGATQCTNATTQSENTNELLSSIHTLIQNQFSQFDKAINAQLHEMNCK IDGQFEEMQNALDQVRNESQVRENSDSTPYNCTPPPRIDFEGPSSRPPFPIHNNTHSNRNFSSAGNGDNVRFTNSNTHLG HSTNVNSQQKSNAKPRKYDGNDDFGEYLSQFEIIAEINQWDYKTKSLQLAGVLTGQAVGVLGELSPTQRRDYDTLVNALN TRFGSLERGELYRARLKVLKLDKGQNLSQLAQEVKKLTRQAYPHANRNMLDILSLDYYIDALPDPDIRLRIRESRPQNIT EAETLAVRKLNDVTSKDSHPIPRIDTTLDALSGSRFYSTIDLKSGYWQVKVAEEDRPKTAFSIPGGGHWQFVSMPFGLCN APATFERLMEKVLANLSWHICMIYLDDIIVLSKSFDEHLENLEQVFSKLQIANLKMNPKKCYFLQKEGNHDSVTGGHLGI KKTQNKIRDKYMWHQMSKDIKQWCLNCDKCASRKGSTKQPKSPLQRNLVGVPMERIAVDVLGPLPLSKKKNSYLLVVGDS FTKWIDAIPIKNQKATTIAQKIIDRIVTIFGIPMQIHSDQGRSFESSIFQEMCNLLGIEKTRSTPYRPQSNGMIERANQT IANMLTAFVNKNQNDWDELIPILMMAYRSSVQESTGFSRFRCRLCGDARHFSSRQQAERHVVTMHSGFAYSCNHCKHLSN LKYDKRHTCAGGAEAGRSLVKRATMTCTPEELQEYNDYFKVRASHVEQYMVEREIPMSDRPSMKGAMVPIRKRTMPTKPH HMGKKKKTVGTDNLAITIQNVASNINTPSPAVQDLALSESEEESPDVTIQVTCESSSKDLQAEVTEDDTDHDEIQVTVDA YGDGSQTSTVIEPLRRVTYNDTLMQTEAVSCNDISAQTDDQGKHNHHNAAQKLRDLAKSQQTKVILQIGNESFTTSASIL SKEESVLSRMIKKHSPLQPYFTHKIMTYSIDRDPSAFSYILDYLRVGSEECISLLPNNMRELRRLYMEASFYELTGLTSL LEKKVLNQLKGL |
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