Gene
| Gene Model ID | pfu_aug2.0_1352.1_08337 |
|---|---|
| Locus | scaffold1352.1 : 132686 ... 151183 : + |
| To GenomeBrowser | scaffold1352.1:132686..151183 |
| Genes list of scaffold | scaffold1352.1 |
| Synonym | pfu_aug1.0_23437.1_26093 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| chromatin assembly factor 1 subunit b | GO:0005515 GO:0005634 GO:0031497 GO:0032991 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1352.1_08337.t1 | 5 | 1 | WD40 | 47 | 76 | 3.2e-27 | 93.3 | 5.3e-06 | 0.078 | 12.8 |
| pfu_aug2.0_1352.1_08337.t1 | 5 | 2 | WD40 | 92 | 126 | 3.2e-27 | 93.3 | 1.2e-10 | 1.8e-06 | 27.6 |
| pfu_aug2.0_1352.1_08337.t1 | 5 | 3 | WD40 | 153 | 187 | 3.2e-27 | 93.3 | 2.6e-11 | 3.8e-07 | 29.7 |
| pfu_aug2.0_1352.1_08337.t1 | 5 | 4 | WD40 | 194 | 229 | 3.2e-27 | 93.3 | 4.4e-08 | 0.00065 | 19.4 |
| pfu_aug2.0_1352.1_08337.t1 | 5 | 5 | WD40 | 367 | 382 | 3.2e-27 | 93.3 | 0.014 | 210.0 | 2.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1352.1_08337.t1 | gi|676431211|ref|XP_009046176.1| | hypothetical protein LOTGIDRAFT_137905 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_1352.1_08337.t1 | gi|524909397|ref|XP_005109746.1| | PREDICTED: chromatin assembly factor 1 subunit B-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_1352.1_08337.t1 | gi|564376047|ref|XP_006248106.1| | PREDICTED: chromatin assembly factor 1 subunit B isoform X1 [Rattus norvegicus] | 0.0 |
| pfu_aug2.0_1352.1_08337.t1 | gi|67078530|ref|NP_001019912.1| | chromatin assembly factor 1 subunit B [Rattus norvegicus] | 0.0 |
| pfu_aug2.0_1352.1_08337.t1 | gi|21312470|ref|NP_082359.1| | chromatin assembly factor 1 subunit B [Mus musculus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_1352.1_08337.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1352.1_08337.t1 atgttggagactgtggggtggttacaatccatgagaagcgcccatctaaccttgattctccatcctactctttgccgcca aatttgcagtgaaaacaaaatgaaagttataacaccagaaatatcatggcatgagaaagaccctgtttacagtatagatt atcagccctgcacaggacctgtgttaagaatagctacaggtggagttgacaaatatgtcaggatatggcaagtgaaagtt agcaaggatggtaaaaccactgtggattttttatcaaatctgaggaggcattctaaagcagtgaatgtatgcagattttc tcctgatgggggtctcctagcaactgcaggggatgatgcagttatattattttggaagttaagtgagtcttcagcaaatc ccggtaacttgtttgaagatgaggaaatggaaaacaaagaaaactgggttgtggccaaagctttacgaggtcatttggag gatatctatgatgtatgttggtcgtcagatgggaaacgtatggtatcagggtctgtcgataacagtgctatattgtggga tcttgtcaaagatcagaagttagctttattcaatgagcacaaaagttttgtccagggagtagcctatgatccattacatg aatattttgctacactaagtgctgacagatcatgcagaatctttagtacaaacgggaagaactgtatgtataatgtgtgt aaaatgtccctgccttcatcatcatcgccagataaaaactctgatagtaaaccaaagtctttcagaatgttccatgatga cacaatgaggtcattcttccgtagactctcctttactgtagatggagaaattctcattgccccagcaggctgtatggaac taggggaaaataaagtcatcaactctacatatttattctcaaggcattcattaaacaaaccagctgtctatttacctagt ccatcaaagttcacaatctgtgtcagatgctgtccatgttacttcaaactaagaaaatcgtcagaaacagaaaacaaacc tgaagacagttcaaataataataaaaaagaatgggaaaaaacatcaacactatttgcgtcccatgacagcagattcctgt ttgttagttctactgatggatactgtaccattataacttttgacgagggggagcttggtgagatatatgtaccagaaaaa gaagttaacagaatggaatcatcagacagcacaacagaaaagtccaagaatgctgataactcagaggtgtcaagtcctat catctcaacgactgttgaatcctcaaatgatggtgaatctagtagttctggcctaaaccttgtcctggaagtcacaaacg actctacctcgcctaacagaccaagtgatataacatctcaaaatgtgtgcagtggtaaagacaatgttacaagcactgac gacaaagacaccgacaaaaacaataccaaagactgtgaaagtgataaaaaatgtgacgtatccacatcatcgaaaaaaga attaacatctgatactccacaacccaggaggatatcttttataactttgtcaaacaatccgtcatga |
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Protein
| Protein ID | pfu_aug2.0_1352.1_08337.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1352.1_08337.t1 MLETVGWLQSMRSAHLTLILHPTLCRQICSENKMKVITPEISWHEKDPVYSIDYQPCTGPVLRIATGGVDKYVRIWQVKV SKDGKTTVDFLSNLRRHSKAVNVCRFSPDGGLLATAGDDAVILFWKLSESSANPGNLFEDEEMENKENWVVAKALRGHLE DIYDVCWSSDGKRMVSGSVDNSAILWDLVKDQKLALFNEHKSFVQGVAYDPLHEYFATLSADRSCRIFSTNGKNCMYNVC KMSLPSSSSPDKNSDSKPKSFRMFHDDTMRSFFRRLSFTVDGEILIAPAGCMELGENKVINSTYLFSRHSLNKPAVYLPS PSKFTICVRCCPCYFKLRKSSETENKPEDSSNNNKKEWEKTSTLFASHDSRFLFVSSTDGYCTIITFDEGELGEIYVPEK EVNRMESSDSTTEKSKNADNSEVSSPIISTTVESSNDGESSSSGLNLVLEVTNDSTSPNRPSDITSQNVCSGKDNVTSTD DKDTDKNNTKDCESDKKCDVSTSSKKELTSDTPQPRRISFITLSNNPS |
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