Gene
| Gene Model ID | pfu_aug2.0_1327.1_24861 |
|---|---|
| Locus | scaffold1327.1 : 87086 ... 103770 : + |
| To GenomeBrowser | scaffold1327.1:87086..103770 |
| Genes list of scaffold | scaffold1327.1 |
| Synonym | pfu_aug1.0_16182.1_46948 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| retinoic acid receptor rxr-alpha-a-like | GO:0003700 GO:0003707 GO:0005634 GO:0006355 GO:0008270 GO:0043401 GO:0043565 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1327.1_24861.t2 | 1 | 1 | zf-C4 | 96 | 164 | 1.1e-31 | 108.8 | 1.3e-35 | 1.9e-31 | 108.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1327.1_24861.t2 | gi|528513530|ref|XP_005161240.1| | PREDICTED: retinoic acid receptor RXR-alpha-A isoform X1 [Danio rerio] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_1327.1_24861.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1327.1_24861.t1 atggatcacacggatatggattccctggacagtggggtcaacagcaactcagctatgacatcagctggcatgggtatcac atcacagatggtcaacaattctatggcatccccaccggacatcaaacctgacatcaactccatctctgtcaactctccat tcttctcatacagcccaggtgtcatgcccatgtcatcacagccctcccccggcacacagcccatgcactcgccaggccta cactcaccttcatcatcagtcacatccccatcaatggcttccttaggctcacccgggtctgcagcgtcacctccaaacac acacatggcacacactactctgaatgtaaaacacatatgtgctatctgtggagaccgagcatcaggaaaacattatggtg tctatagttgtgaaggctgtaaaggatttttcaaaagaacagttcgtaaggatctgacgtatgcctgtagagatgacagg aactgcatcatcgacaaacgacaaaggaatcgatgtcagtactgtagatatatgaaatgtcttgccatgggcatgaaacg agaagatgttaaatgtggtgccgaaaggaatactgctgtacaagaagaacgacagcgagtcaaagagaagggggaaggcg aggtagaaagtacaagtagtgctaactctgacatgcccgtcgagaaaatccttgaggctgagctggctgtggaacctaaa aacgatacctacatagatactcagttagttcattacattttggccaaatactatggtaaagatacatga |
|
| Transcript ID | pfu_aug2.0_1327.1_24861.t2 |
| Definition | - |
>pfu_aug2.0_1327.1_24861.t2 atgggtatcacatcacagatggtcaacaattctatggcatccccaccggacatcaaacctgacatcaactccatctctgt caactctccattcttctcatacagcccaggtgtcatgcccatgtcatcacagccctcccccggcacacagcccatgcact cgccaggcctacactcaccttcatcatcagtcacatccccatcaatggcttccttaggctcacccgggtctgcagcgtca cctccaaacacacacatggcacacactactctgaatgtaaaacacatatgtgctatctgtggagaccgagcatcaggaaa acattatggtgtctatagttgtgaaggctgtaaaggatttttcaaaagaacagttcgtaaggatctgacgtatgcctgta gagatgacaggaactgcatcatcgacaaacgacaaaggaatcgatgtcagtactgtagatatatgaaatgtcttgccatg ggcatgaaacgagaagatgttaaatgtggtgccgaaaggaatactgctgtacaagaagaacgacagcgagtcaaagagaa gggggaaggcgaggtagaaagtacaagtagtgctaactctgacatgcccgtcgagaaaatccttgaggctgagctggctg tggaacctaaaaacgatacctacatagatactcagttagttcattacattttggccaaatactatggtaaagatacatga |
|
Protein
| Protein ID | pfu_aug2.0_1327.1_24861.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1327.1_24861.t1 MDHTDMDSLDSGVNSNSAMTSAGMGITSQMVNNSMASPPDIKPDINSISVNSPFFSYSPGVMPMSSQPSPGTQPMHSPGL HSPSSSVTSPSMASLGSPGSAASPPNTHMAHTTLNVKHICAICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRDDR NCIIDKRQRNRCQYCRYMKCLAMGMKREDVKCGAERNTAVQEERQRVKEKGEGEVESTSSANSDMPVEKILEAELAVEPK NDTYIDTQLVHYILAKYYGKDT |
|
| Protein ID | pfu_aug2.0_1327.1_24861.t2 |
| Definition | - |
>pfu_aug2.0_1327.1_24861.t2 MGITSQMVNNSMASPPDIKPDINSISVNSPFFSYSPGVMPMSSQPSPGTQPMHSPGLHSPSSSVTSPSMASLGSPGSAAS PPNTHMAHTTLNVKHICAICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRDDRNCIIDKRQRNRCQYCRYMKCLAM GMKREDVKCGAERNTAVQEERQRVKEKGEGEVESTSSANSDMPVEKILEAELAVEPKNDTYIDTQLVHYILAKYYGKDT |
|