Gene
| Gene Model ID | pfu_aug2.0_130.1_00299 |
|---|---|
| Locus | scaffold130.1 : 462149 ... 469391 : + |
| To GenomeBrowser | scaffold130.1:462149..469391 |
| Genes list of scaffold | scaffold130.1 |
| Synonym | pfu_aug1.0_4983.1_67118 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_130.1_00299.t1 | 1 | 1 | Lectin_C | 47 | 158 | 1.2e-16 | 61.2 | 3.3e-20 | 1.6e-16 | 60.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_130.1_00299.t1 | gi|663250131|ref|XP_008488506.1| | PREDICTED: hepatic lectin-like [Calypte anna] | 4.0e-20 |
| pfu_aug2.0_130.1_00299.t1 | gi|698401465|ref|XP_009808911.1| | PREDICTED: hepatic lectin-like [Gavia stellata] | 4.0e-19 |
| pfu_aug2.0_130.1_00299.t1 | gi|524966380|ref|XP_005083088.1| | PREDICTED: collectin-12 [Mesocricetus auratus] | 4.0e-19 |
| pfu_aug2.0_130.1_00299.t1 | gi|584084357|ref|XP_006761941.1| | PREDICTED: collectin-12 [Myotis davidii] | 5.0e-19 |
| pfu_aug2.0_130.1_00299.t1 | gi|533115120|ref|XP_005373205.1| | PREDICTED: collectin-12, partial [Chinchilla lanigera] | 6.0e-19 |
Transcript
| Transcript ID | pfu_aug2.0_130.1_00299.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_130.1_00299.t1 atgattttttctgctatgctcgggatattcatcttatatgctattggatgttgccgtggtaaagatttggatgttcccac gggagaatgtgataaaggctggattccttatgacggccactgctatcttttcagcaaggaaaagatgtcatggtatgatg ccaagatattttgtaatgagaaagaggcgtaccttgcaagggttgaaacccgaaaagagaacatttggcttcagatacaa gcaagaattttaactaaagagcgaatatatttaggcggtacagatgcaggtcatgaaggaacatggagatgggaatcaaa cgcagacgaaattgaattttcagactggagaagaggtcaacccgatggctcaagtaaagaaaattgtcttcacttatatg gaaatggagttttagacacctatcaatggaacgacattccttgcgttactcaatacaaattcgtgtgcgaaaaagagtgg acgaacaaacataattattactttacggagaggaagacaagaagaggttcacctgtaacagtcattcacaattataaagg aaactaa |
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Protein
| Protein ID | pfu_aug2.0_130.1_00299.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_130.1_00299.t1 MIFSAMLGIFILYAIGCCRGKDLDVPTGECDKGWIPYDGHCYLFSKEKMSWYDAKIFCNEKEAYLARVETRKENIWLQIQ ARILTKERIYLGGTDAGHEGTWRWESNADEIEFSDWRRGQPDGSSKENCLHLYGNGVLDTYQWNDIPCVTQYKFVCEKEW TNKHNYYFTERKTRRGSPVTVIHNYKGN |
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