Gene
| Gene Model ID | pfu_aug2.0_1240.1_01494 |
|---|---|
| Locus | scaffold1240.1 : 39995 ... 53425 : - |
| To GenomeBrowser | scaffold1240.1:39995..53425 |
| Genes list of scaffold | scaffold1240.1 |
| Synonym | pfu_aug1.0_25730.1_26266 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1240.1_01494.t1 | 1 | 1 | RhoGEF | 68 | 148 | 1.5e-09 | 37.9 | 7.2e-13 | 2.7e-09 | 37.1 |
| pfu_aug2.0_1240.1_01494.t1 | 2 | 1 | PH_5 | 158 | 265 | 8.6e-11 | 41.9 | 1.3e-13 | 4.8e-10 | 39.5 |
| pfu_aug2.0_1240.1_01494.t1 | 1 | 1 | PH | 166 | 268 | 2.5e-08 | 34.0 | 1.5e-11 | 5.6e-08 | 32.9 |
| pfu_aug2.0_1240.1_01494.t1 | 2 | 2 | PH_5 | 341 | 357 | 8.6e-11 | 41.9 | 1.3 | 4900.0 | -2.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1240.1_01494.t1 | gi|507660740|ref|XP_004635368.1| | PREDICTED: neuroepithelial cell-transforming gene 1 protein [Octodon degus] | 0.0 |
| pfu_aug2.0_1240.1_01494.t1 | gi|676491681|ref|XP_009065674.1| | hypothetical protein LOTGIDRAFT_132999, partial [Lottia gigantea] | 6.02558e-44 |
| pfu_aug2.0_1240.1_01494.t1 | gi|524907080|ref|XP_005108667.1| | PREDICTED: rho guanine nucleotide exchange factor 3-like [Aplysia californica] | 4.00001e-40 |
| pfu_aug2.0_1240.1_01494.t1 | gi|729764541|ref|XP_010579336.1| | PREDICTED: neuroepithelial cell-transforming gene 1 protein isoform X1 [Haliaeetus leucocephalus] | 5.0e-38 |
| pfu_aug2.0_1240.1_01494.t1 | gi|729764543|ref|XP_010579337.1| | PREDICTED: neuroepithelial cell-transforming gene 1 protein isoform X2 [Haliaeetus leucocephalus] | 5.0e-38 |
Transcript
| Transcript ID | pfu_aug2.0_1240.1_01494.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1240.1_01494.t1 atgtactcactatttttaaagaggtccaccagcttcaaagtgccatgctcgccatcaccgaaacataacgtcacaccgta caaagccccgtcaccatctcccgtcaaacgtcgtctgagccgtacttggagcgagatgatctctgcagagggaagcatgc cgacagaactcactcagagagatattaaacgacaagaggccatatatgaattgtatcaaggtgaaaatgacctggtcgaa gacttgaacattgtgaaaaagacatacagagattctatggagaaactaaagctaatgacagaatgggagcttgaccagat atttggacctgtagaccagttaatacccattcatgaagatttgtcaaataagttactaaatgagagactgccaaatggta caacacaggatgttggtagtatactattagaatggctgtgtgaggagttggagaaatctcatatgttgatctgcaatgga actttgaaaaacaataaaggaactaaattgcaagtatttctctttgacaacatttttgtcgtgacacggttagtccaaca tggcggacatcagaattaccagatatatcggcagccgatacccttaagagaactgaaacttgagaacttgaaagatggag aggtcaaggtcggatcgttccgaggagctttcggaaataatcagacagccaagaacgttttccgtgtgtcgtttaaagat tccagccgaggacagtctcacacacttatagcgacagacgagcacagtaagaggcagtggatgcagtgtttacagacggc tctcgacaactgtccgatccaggatgaggatccatgtctcgagaggcgttccgaacctgacggaaaagaatctgacagct ccttggatgaaaaacatgaggacaatatcttcgatcttgatgtcgtgccgctatccgatgaggacaacgaaaatatccat aataatgtcaaggtcaacagaattcgtaaaagttcagacgaagaggtgaaatgcgaaaagaagtcaaagctgcgtaggtc atcgtctgttggaagtcaaaggtctaggtcaagtctgaggttacagagcttgggaggaaaataatatttgtga |
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Protein
| Protein ID | pfu_aug2.0_1240.1_01494.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1240.1_01494.t1 MYSLFLKRSTSFKVPCSPSPKHNVTPYKAPSPSPVKRRLSRTWSEMISAEGSMPTELTQRDIKRQEAIYELYQGENDLVE DLNIVKKTYRDSMEKLKLMTEWELDQIFGPVDQLIPIHEDLSNKLLNERLPNGTTQDVGSILLEWLCEELEKSHMLICNG TLKNNKGTKLQVFLFDNIFVVTRLVQHGGHQNYQIYRQPIPLRELKLENLKDGEVKVGSFRGAFGNNQTAKNVFRVSFKD SSRGQSHTLIATDEHSKRQWMQCLQTALDNCPIQDEDPCLERRSEPDGKESDSSLDEKHEDNIFDLDVVPLSDEDNENIH NNVKVNRIRKSSDEEVKCEKKSKLRRSSSVGSQRSRSSLRLQSLGGKXYL |
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