Gene
| Gene Model ID | pfu_aug2.0_1240.1_01491 |
|---|---|
| Locus | scaffold1240.1 : 637 ... 1805 : - |
| To GenomeBrowser | scaffold1240.1:637..1805 |
| Genes list of scaffold | scaffold1240.1 |
| Synonym | pfu_aug1.0_10401.1_17619 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1240.1_01491.t1 | 1 | 1 | zf-B_box | 14 | 49 | 3.1e-10 | 39.7 | 1.4e-13 | 6.8e-10 | 38.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1240.1_01491.t1 | gi|742114901|ref|XP_010837439.1| | PREDICTED: tripartite motif-containing protein 3 [Bison bison bison] | 8.0e-06 |
| pfu_aug2.0_1240.1_01491.t1 | gi|119589120|gb|EAW68714.1| | tripartite motif-containing 3, isoform CRA_e [Homo sapiens] | 9.0e-06 |
| pfu_aug2.0_1240.1_01491.t1 | gi|594034959|ref|XP_006042171.1| | PREDICTED: tripartite motif-containing protein 3 isoform X1 [Bubalus bubalis] | 9.0e-06 |
| pfu_aug2.0_1240.1_01491.t1 | gi|560918965|ref|XP_006185707.1| | PREDICTED: tripartite motif-containing protein 3 isoform X1 [Camelus ferus] | 9.0e-06 |
| pfu_aug2.0_1240.1_01491.t1 | gi|32454737|ref|NP_150594.2| | tripartite motif-containing protein 3 isoform 1 [Homo sapiens] | 1.0e-05 |
Transcript
| Transcript ID | pfu_aug2.0_1240.1_01491.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1240.1_01491.t1 atggctgccagtttatgcagggctcaatatgtgctcaagctttgtgaaaaacacgacaagaaagagctacaagcattttg taaaacatgtgtagagaaaatatgttcatcatgtataaaggaggagcataattcgcatgactgggaactgattacagaca tcattcgggagaaaaaacgcagtttgccagtggaatgtcaagaaattcgtacaaaacaacttccgggtttaagagacgat atttgtcgctttggtagaaaaatagaagaggaagaaacaagattacaggaaaacaaatctgttttgaatgattcaaggca aagtcatatcagcagaattaaccaattgtacgatgagaaactagatgaatatgagcaaaagtcggaggctgttgtacaat tatacaaagacaagcttgacggattgaaacagaaggtggaatacctggatgtgatgacattagctctagacaaggatatc aatacattacctgaccatgacattctagacatggagaaggagatgagggaagaacttgagaaggcccttgctttttgctc cgacaagtacacaagcacaatgctcttcttgcccgggcaaatgaatgtacaggctttggagaaaattataggcgacatta agagcttttacctaaacgaagagtatgacatcgataggtactctgaaatcgtaatctcattgaagaccgtctctgatata aacgcctttgtactgattggcaatagctggtctgcaaaagcaagaatgattgaaagaactggagttgaactgaaaacaat gaaaactccttgctatgactttgcagtcttgaataatggcatgtttgtactcactgatgacaaaaaatgtatcattttag ttcttactcaagatgaagataaaataagaacaataaacaccaaaccattacagcctacctggatcagtaagacaaagaat gacgacatactagtttcaatgagggatggtggcgactgctacaatctggtaccgaccagccgccgtatcgtccagcgtat gactcttaccgggaagatgattcacacttaa |
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Protein
| Protein ID | pfu_aug2.0_1240.1_01491.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1240.1_01491.t1 MAASLCRAQYVLKLCEKHDKKELQAFCKTCVEKICSSCIKEEHNSHDWELITDIIREKKRSLPVECQEIRTKQLPGLRDD ICRFGRKIEEEETRLQENKSVLNDSRQSHISRINQLYDEKLDEYEQKSEAVVQLYKDKLDGLKQKVEYLDVMTLALDKDI NTLPDHDILDMEKEMREELEKALAFCSDKYTSTMLFLPGQMNVQALEKIIGDIKSFYLNEEYDIDRYSEIVISLKTVSDI NAFVLIGNSWSAKARMIERTGVELKTMKTPCYDFAVLNNGMFVLTDDKKCIILVLTQDEDKIRTINTKPLQPTWISKTKN DDILVSMRDGGDCYNLVPTSRRIVQRMTLTGKMIHT |
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