Gene
| Gene Model ID | pfu_aug2.0_1216.1_21471 |
|---|---|
| Locus | scaffold1216.1 : 59687 ... 70835 : - |
| To GenomeBrowser | scaffold1216.1:59687..70835 |
| Genes list of scaffold | scaffold1216.1 |
| Synonym | pfu_aug1.0_11099.1_10261 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1216.1_21471.t1 | 2 | 1 | SH3_2 | 338 | 399 | 1.5e-27 | 94.7 | 2.4e-18 | 8.8e-15 | 53.9 |
| pfu_aug2.0_1216.1_21471.t1 | 2 | 1 | SH3_1 | 339 | 393 | 2.6e-15 | 55.5 | 1.2e-09 | 4.6e-06 | 25.9 |
| pfu_aug2.0_1216.1_21471.t1 | 2 | 1 | SH3_9 | 340 | 396 | 5.1e-19 | 67.6 | 9.9e-10 | 3.7e-06 | 26.4 |
| pfu_aug2.0_1216.1_21471.t1 | 2 | 2 | SH3_2 | 460 | 518 | 1.5e-27 | 94.7 | 1.6e-13 | 5.8e-10 | 38.5 |
| pfu_aug2.0_1216.1_21471.t1 | 2 | 2 | SH3_1 | 461 | 514 | 2.6e-15 | 55.5 | 6.6e-10 | 2.4e-06 | 26.8 |
| pfu_aug2.0_1216.1_21471.t1 | 2 | 2 | SH3_9 | 462 | 518 | 5.1e-19 | 67.6 | 1.4e-13 | 5.1e-10 | 38.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1216.1_21471.t1 | gi|524893819|ref|XP_005103418.1| | PREDICTED: peripheral-type benzodiazepine receptor-associated protein 1-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_1216.1_21471.t1 | gi|676437836|ref|XP_009048333.1| | hypothetical protein LOTGIDRAFT_85300, partial [Lottia gigantea] | 0.0 |
| pfu_aug2.0_1216.1_21471.t1 | gi|704193158|ref|XP_010139690.1| | PREDICTED: RIMS-binding protein 2 isoform X3 [Buceros rhinoceros silvestris] | 0.0 |
| pfu_aug2.0_1216.1_21471.t1 | gi|704193154|ref|XP_010139689.1| | PREDICTED: RIMS-binding protein 2 isoform X2 [Buceros rhinoceros silvestris] | 0.0 |
| pfu_aug2.0_1216.1_21471.t1 | gi|699637566|ref|XP_009909328.1| | PREDICTED: RIMS-binding protein 2 isoform X3 [Picoides pubescens] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_1216.1_21471.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1216.1_21471.t1 atgatagacaatatagagtatgaggaggattttgtcgagacaagtagcagttctgaactgtctgatatcccagaggaagt ggaggaagagaatgatgatcagctgaccaatcgaatctctccttcaggaaaactcagcccctcattggttaatgggcaca tctcaccttctaagggtaaatcggggaagtcaactccgaggtcttcaccaaacaagaagttatctcccatagatccccag tccaagggaagtccagccgtgtccagggtagtgcccgctatagagataactcgtgatagcagcagtgagcgagggaattc atttgacgtttcagatgatgatatggacggtggtcgcagagtttcgttgtcaaacaagcgaggacacggtgaaaggagag attctcctagcagcaaacgttcacaggatttaaagcatgaaaaagaaagacaaacaggaacaacaaaagaaggcaatgta gaaaatctgaacggtcatggggaagatgtttctattgtaaaatctagtggaagtttttccaagaagccagataaaagttc tgttgttagtgatttggtgcataaaaatgaagtgaatattaggacaggacctaatactgaaagtcctaagaggactccaa aacacgggtcagttattagtgaaaaagatgtccattgtgaaattgatagtacttctacacataggaatagtccaaaggtg cctcaatctgccagccctaaacatggtgcaaaaatagacggtcgagtgtcaaatagttcacatcgaggggtcaataaaat acataacgaccccaatgccaacaagatttcaaacagtccttacacggtgcgtgataatgctcatatttcagatagttatc tctctcacgacgcggagagcactcgcatacctcagttagatctgacagattatgaagtggacgatagttgtgacgttgac tcgataagcggggaaataaatccacctatagaggataatcgtgtgcgtttatttgtggcattgttcgattatgacccaga gagtatgtcgcccaatgttgaatctctagaggaggagttaccattcaaagaggggcagataatcaagatatatggtgaca aggatgccgatgggttctacaggggggagtgtaatggtagagtgggtttcgtcccctgtaatatggtgtctgaggtccag gtggacgaccctgatctggcagaacaattactcaaagaaagccaggctgctttcaatctcaatactcatatttcagaggg tgataactacatgaagccattagatgtcaacacggaggacatgaggagcagtccaaatcgtgttaccacggtaacggcta gtacacagcgaaggaaaatggtggcattatacgattatgatccacaagagctctcaccaaatgttgatgcagagcttgag ctgtcgtttaagagcggagataacattgtaatttacggtgatatggacgatgatgggttttacctcggagagctgaacgg tcagagaggactggtgccttctaacttcctacaggacgcaccgttaagtgacgaagaaaacatagaaagtgccagcataa tctcaccttcaaggctttag |
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Protein
| Protein ID | pfu_aug2.0_1216.1_21471.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1216.1_21471.t1 MIDNIEYEEDFVETSSSSELSDIPEEVEEENDDQLTNRISPSGKLSPSLVNGHISPSKGKSGKSTPRSSPNKKLSPIDPQ SKGSPAVSRVVPAIEITRDSSSERGNSFDVSDDDMDGGRRVSLSNKRGHGERRDSPSSKRSQDLKHEKERQTGTTKEGNV ENLNGHGEDVSIVKSSGSFSKKPDKSSVVSDLVHKNEVNIRTGPNTESPKRTPKHGSVISEKDVHCEIDSTSTHRNSPKV PQSASPKHGAKIDGRVSNSSHRGVNKIHNDPNANKISNSPYTVRDNAHISDSYLSHDAESTRIPQLDLTDYEVDDSCDVD SISGEINPPIEDNRVRLFVALFDYDPESMSPNVESLEEELPFKEGQIIKIYGDKDADGFYRGECNGRVGFVPCNMVSEVQ VDDPDLAEQLLKESQAAFNLNTHISEGDNYMKPLDVNTEDMRSSPNRVTTVTASTQRRKMVALYDYDPQELSPNVDAELE LSFKSGDNIVIYGDMDDDGFYLGELNGQRGLVPSNFLQDAPLSDEENIESASIISPSRL |
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