Gene
| Gene Model ID | pfu_aug2.0_1167.1_24743 |
|---|---|
| Locus | scaffold1167.1 : 177511 ... 185575 : - |
| To GenomeBrowser | scaffold1167.1:177511..185575 |
| Genes list of scaffold | scaffold1167.1 |
| Synonym | pfu_aug1.0_3076.1_08524 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| wd repeat domain-containing protein 83-like | GO:0000375 GO:0071013 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1167.1_24743.t1 | 4 | 1 | eIF2A | 10 | 40 | 1.5e-08 | 34.5 | 0.095 | 180.0 | 1.7 |
| pfu_aug2.0_1167.1_24743.t1 | 7 | 1 | WD40 | 18 | 46 | 3.8e-40 | 134.3 | 2.5e-10 | 4.7e-07 | 29.4 |
| pfu_aug2.0_1167.1_24743.t1 | 7 | 2 | WD40 | 52 | 88 | 3.8e-40 | 134.3 | 1.2e-05 | 0.022 | 14.6 |
| pfu_aug2.0_1167.1_24743.t1 | 4 | 2 | eIF2A | 70 | 157 | 1.5e-08 | 34.5 | 1.5e-06 | 0.0028 | 17.3 |
| pfu_aug2.0_1167.1_24743.t1 | 7 | 3 | WD40 | 92 | 130 | 3.8e-40 | 134.3 | 4.1e-15 | 7.7e-12 | 44.6 |
| pfu_aug2.0_1167.1_24743.t1 | 7 | 4 | WD40 | 138 | 170 | 3.8e-40 | 134.3 | 6.9e-06 | 0.013 | 15.3 |
| pfu_aug2.0_1167.1_24743.t1 | 4 | 3 | eIF2A | 156 | 206 | 1.5e-08 | 34.5 | 0.012 | 22.0 | 4.7 |
| pfu_aug2.0_1167.1_24743.t1 | 7 | 5 | WD40 | 185 | 210 | 3.8e-40 | 134.3 | 0.0022 | 4.0 | 7.4 |
| pfu_aug2.0_1167.1_24743.t1 | 7 | 6 | WD40 | 219 | 256 | 3.8e-40 | 134.3 | 8.9e-06 | 0.017 | 15.0 |
| pfu_aug2.0_1167.1_24743.t1 | 4 | 4 | eIF2A | 248 | 290 | 1.5e-08 | 34.5 | 0.0025 | 4.5 | 6.9 |
| pfu_aug2.0_1167.1_24743.t1 | 7 | 7 | WD40 | 273 | 293 | 3.8e-40 | 134.3 | 0.00032 | 0.59 | 10.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1167.1_24743.t1 | gi|676476943|ref|XP_009060960.1| | hypothetical protein LOTGIDRAFT_193477 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_1167.1_24743.t1 | gi|72160341|ref|XP_791368.1| | PREDICTED: WD repeat domain-containing protein 83 [Strongylocentrotus purpuratus] | 0.0 |
| pfu_aug2.0_1167.1_24743.t1 | gi|524883604|ref|XP_005098429.1| | PREDICTED: WD repeat domain-containing protein 83-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_1167.1_24743.t1 | gi|291226595|ref|XP_002733281.1| | PREDICTED: WD repeat domain-containing protein 83-like [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_1167.1_24743.t1 | gi|558110826|ref|XP_006111920.1| | PREDICTED: WD repeat domain-containing protein 83 isoform X1 [Pelodiscus sinensis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_1167.1_24743.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1167.1_24743.t1 atgacaacttctaaaattcccacacagttaaatgaaatcataacatgtaaacaaggagcagtaagggcagtgagatttaa ttgtgatggcaattactgtttaacttgtggaagtgataaatcagtgaagttatggaatcctcaccgaggcctgctcttga agtcgtactcggttcatggttacgaggtactcgatgctcagtcctcaagtgataacagtcagatctgctccggagggatg gacaaaactgttgtgctctttgacgtagccactggaaaatctctcaggaaatacaggggacatgctggtgtagttaactg tatcaagtttaatgaggagtccacggtgatcttatcggggtcaacagacaacacagtgaggatctgggactgtaaaagta gaaaactggatcctgtacaggtcatggatgaagctaaggacagtgtgacctccatacaggtatctgaccatgagattctg acgggatctgctgatggctgtatcaggcgatatgatctacgtactggaaaaatgatcaaagattgtataggaaactctgt ttcctctgtgaccttcaccagagatggtcagtgtgttctagtcagtacattagacgactctttaaagctaatggataaag acacaggagaaatgctcaatgaatttactggtcacaaaaaccgcagttataagatagacagttgtttgaatagtaacgat acacatgttataagtggatcagagaatggccaggtctacatatgggacttactggaggcaaaagttgtagagaagttaca gcataataagatgagagcggtacactccctgtcatatcacccggaggatacgtgtctactaactgcttgtgaggataaga tatatatgtggtgtgccgagaaatctgacgcttcttga |
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Protein
| Protein ID | pfu_aug2.0_1167.1_24743.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1167.1_24743.t1 MTTSKIPTQLNEIITCKQGAVRAVRFNCDGNYCLTCGSDKSVKLWNPHRGLLLKSYSVHGYEVLDAQSSSDNSQICSGGM DKTVVLFDVATGKSLRKYRGHAGVVNCIKFNEESTVILSGSTDNTVRIWDCKSRKLDPVQVMDEAKDSVTSIQVSDHEIL TGSADGCIRRYDLRTGKMIKDCIGNSVSSVTFTRDGQCVLVSTLDDSLKLMDKDTGEMLNEFTGHKNRSYKIDSCLNSND THVISGSENGQVYIWDLLEAKVVEKLQHNKMRAVHSLSYHPEDTCLLTACEDKIYMWCAEKSDAS |
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